similar to: install-packages

Now I try to add some C and Fortan code to my package, so the NAMESPACE file is useDynLib(eha) importFrom(survival, Surv) export(mlreg.fit, risksets) but I get ..... * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... WARNING Error in .try_quietly({ : Error in library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) :

A few days ago I uploaded to CRAN a new package called 'eha', which stands for 'Event History Analysis'. Its main focus is on proportional hazards modeling in survival analysis, and in that respect eha can be regarded as a complement and an extension to the 'survival' package. In fact eha requires survival. Eha contains three functions for proportional hazards

A few days ago I uploaded to CRAN a new package called 'eha', which stands for 'Event History Analysis'. Its main focus is on proportional hazards modeling in survival analysis, and in that respect eha can be regarded as a complement and an extension to the 'survival' package. In fact eha requires survival. Eha contains three functions for proportional hazards

Dear R-users, I need to use the aftreg function in package 'eha' to estimate failure times for left truncated survival data. Apparently, survreg still cannot fit such models. Both functions should be fitting the accelerated failure time (Weibull) model. However, as G?ran Brostr?m points out in the help file for aftreg, the parameterisation is different giving rise to different

Thanks: I installed from source and got an error when loading a package: -------------------------------------------------------------------- > library(eha) Loading required package: survival Error: package or namespace load failed for ?eha? in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/usr/local/lib/R/site-library/eha/libs/eha.so':

I noticed the same thing as I reported below, when I upgraded from R-2.0.0-alpha-20040918 to today's beta version: 'R CMD check' failed as before; but after cleaning 'src' from .o and .so files, it worked again. So the two-day-old '.so' file is obviously different from today's. Has compiler directives changed in the two last days? Or what is happening? G?ran On

This happened to me with R-1.7.0, Linux RH9: ------------------------------------------------------------------ > q() Save workspace image? [y/n/c]: y Warning messages: 1: namespaces may not be available when loading 2: names in persistent strings are currently ignored gb at lasker:~/R/test$ R R : Copyright 2003, The R Development Core Team Version 1.7.0 (2003-04-16) R is free software

A new version of 'eha' (0.92-1) is now on CRAN. From the ChangeLog: 0.92-1 (January 7, 2004) * mlreg: Geometric distribution (i.e., constant baseline discrete hazard) added. Not for frailty models, yet (on the TODO list). * mlreg: New argument, 'n.points', added to 'control'. Controls the number of points used in the Gauss-Hermite quadrature. * mlreg: Stricter

A new version (0.96.3) of the package 'eha' is now on CRAN. Apart from some bug fixes, there are some news. The most noteworthy are: (i) 'plot.Surv' has a few new options, (ii) 'weibreg' now can fit null models (i.e., only scale and shape) and covariates are no longer automatically centered (although this is still the default), (iii) there is a new function,

A new version of 'eha' (0.92-1) is now on CRAN. From the ChangeLog: 0.92-1 (January 7, 2004) * mlreg: Geometric distribution (i.e., constant baseline discrete hazard) added. Not for frailty models, yet (on the TODO list). * mlreg: New argument, 'n.points', added to 'control'. Controls the number of points used in the Gauss-Hermite quadrature. * mlreg: Stricter

On 2020-07-15 14:36, Dirk Eddelbuettel wrote: > > G?ran, > > This is not an easy email to reply to because it _contains nothing > reproducible_. Thanks Dirk, Sorry about that, but my real question was (see below): "Is the problem that openblas uses C versions of blas?" That is, do I need to change F77_CALL(name)(...); to cblas_name(...); everywhere? And if so, is

Den 2017-12-01 kl. 20:24, skrev Dirk Eddelbuettel: > > On 1 December 2017 at 19:55, G?ran Brostr?m wrote: > | Hello, > | > | the following is a part of a question asked on R-help. I realized that > | it is better suited for asking here. Apologies for the cross-posting! > | > | I'm on Ubuntu artful, and upgraded with 'apt'. Then > | > |

A user of 'eha' told me that it failed to load in R-2.2.0 on Windows, and ideed, I checked and it fails with the error message "The procedure entry point expm1 could not be located in the dynamic link libary R.dll". I'm using expm1 (from the C math library on Linux, I would guess) in a couple of C functions. This didn't happen with R-2.1.1 (and it doesn't happen with

I am unsure what is being returned, and what is supposed to be returned, when using 'predict' with "type='expected'" for an aftreg survival model. The code below first generates a weibull model, then uses predict to create a vector of the linear predictors, then attempts to create the 'expected' vector, which is empty. The final two steps in the code generate a

On 2019-09-11 22:16, Avraham Adler wrote: > Can you write a small C function that calls LAPACK call that fro your > Fortran code? Yes, an extra step but maybe less traumatic than rewriting > parts of LAPACK directly. Yes, I know how to do that, but I find it somewhat bizarre that it is impossible to call a Fortran subroutine from Fortran. And rewriting 'dgemv' was simple:

I am running R 3.5.1 on ubuntu 18.04, installed via apt. When I run R from the bash prompt, I get (reinstalling r-base doesn't help) > devtools::install_github("goranbrostrom/eha", build_vignettes = TRUE) *** caught segfault *** address 0x68456, cause 'memory not mapped' Traceback: 1: dyn.load(file, DLLpath = DLLpath, ...) 2: library.dynam(lib, package,

On 2018-07-07 06:27, Dirk Eddelbuettel wrote: > > On 7 July 2018 at 00:51, G?ran Brostr?m wrote: > | My repo is > | > | deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ > | > | Is that wrong? > > That repo will give you R and key R packages like Matrix lme4. (And you > chose to ignore this repo by compiling R yourself ...). Not really: I installed

I use Gnu emacs 21, Linux RH9 and R-1.7.0. I have succeeded to get the recommended indentation of 4 in C thru customization as described in 'R-exts', p.73, but I can't get it to work in R code. Can someone help, for instance by sending me the appropriate lines in '.emacs'? Thanks! --- G?ran Brostr?m tel: +46 90 786 5223 Department of Statistics

Dear all, I have some trouble using the "id"-argument with aftreg (accelerated failure time regression analysis from the eha library). As far as I understand it, the id argument is used to group individuals together if there are time-varying covariates and the data is arranged in counting process style. Unfortunately, i cannot figure out how to use the "id"-argument. The

Dear All, I would like to fit some parametric survival models using left truncated, right censored data in R. However I am having problems finding a function to fit parametric survival models which can handle left truncated data. I have tested both the survreg function in package survival: fit1 <- survreg(Surv(start, stop, status) ~ X + Y + Z, data=data1) and the psm function in package