similar to: Images Import and Analysis

Hi I am facing a problem where I would like to import a TIFF image (of spots on a nylon filter) into R (into a matrix for example). When plotting the matrix using fx. scatterplot3d I would then be able to see how the pixel-intensities are distributed in "spot-areas" on the filter - which would be very helpful. Does anynone know of a way to do this? Best regards, Peter Hagedorn ...

Hi, I am trying to use "read.pnm" from the package "pixmap" to read more than 10 thousand image files in "mydir". > file.list <- dir( "mydir", full=T) > for( i in 1:length(file.list) ) { print(i) x <- read.pnm(file.list[i]) } In the beginning it was fine. But after reading 1020 images or so, the read.pnm function seems to crash on

Hi all, I have a 16 bit image (TIFF) and i want to analyse the pixels distribution. So, i obtain a matrix which values are between 0 and 2^16 -1. Now i would like to represnt this image with the fucntions rgb() and image(). I am not sure , but i think that only 256 colors are available. So is there a solution to represent all the palette of the colors or i have to limit the representations with

Hello, I''m working on an import utility that will match the functionality of uploading an object of a model that uses attachment_fu for thumbnailing, etc. Rather than uploading the file via a form, I want to populate the params[:image][:uploaded_data] with data from a file already on the server''s file system. So far, I''ve been able to copy to an instance of Tempfile

Is there a tool for reading a graphics file into an object? I might not be looking with the correct vocabulary, but I'm finding lots of references to producing graphics from R, but not any for inputting graphics into R. I'd like to use a jpeg image and have the data available in R for analysis. I could convert the image to another format, PPM perhaps, and parse that in, GRASS seems like

I think this was asked recently but I can't find the item. Is it possible to find the colour at a point on a graphics page? I want to estimate the area of a complex shape by colouring it then random sampling from an enclosing box ... Richard Rowe Richard Rowe Senior Lecturer Department of Zoology and Tropical Ecology, James Cook University Townsville, Queensland 4811, Australia fax (61)7

Dear R-help I want to display an image file in a new plot frame. SVG is my preferred format, but I can also consider PNG, GIF, JPEG, TIFF, and PPM (from ImageMagick). By way of background (although not material to this posting), the image file is generated by a call to 'dot' (part of the 'Graphviz' suite) after the required .dot file has been produced using hand-crafted R code.

I'm using the current version of xtable for 1.9.0 and I have an interesting error: Error in match.names(clabs, names(xi)) : names don't match previous names: F value, Pr(>F) In addition: Warning message: longer object length is not a multiple of shorter object length in: clabs == nmi This is produced in the following manner: >data.trans <-

This is a strange request, but I want to build a scatterplot using different image files (jpegs, gif, etc.) as the plot symbols. I have thought about setting this up using a very large layout matrix, but I thought someone might have a better approach. Furthermore, is there any way to have R paste an image file into a specific coordinate within a scatterplot? Thanks in advance, Mike Mike

I would like to to know about conversion from jpg file to lss format. I used ppmtolss16. It is giving following errors. for .jpg file: ppmtolss16: stdin is not a raw PPM file at ppmtolss16 line 105, <STDIN> line 1. for .png files: ppmtolss16: stdin is not a raw PPM file at ppmtolss16 line 105, <STDIN> line 1. from .ppm file: ( I converted .jpg file in to .ppm file using irfanview)

Dear all, Several days ago, I posted How to write a bmp file pixel by pixel. Instead of bmp, I succeeded in writing a PPM file by using the pixmap package. Thanks for the hint generously provided by Uwe Ligges. Now I have a new question. How to convert a PPM file to BMP file in R? I know I can do this in photoshop or by some other softwares, but I think if I Can do this in R, that

Hi all, Although R seems to have jpeg() and png() functions that converts data into jpeg and png formated files, it doesn't have functions the other way around. Does one of R contributed packages have gif, jpeg and png image readers? I did help.search() but no luck Regards, Jonathan -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read

I would like to import "tif" images in R and I do not find any function that can do that. In Matlab there exists the function "imread" that can read the most known images format. Does a similar function exist for R ? Thanks in advance -- Herve CARDOT ____________________________________________________________ Unite Biometrie et Intelligence Artificielle, INRA Toulouse BP

I have a graphic image in a file (say a *.jpeg or *.png file) and want to put it into a plot. I have segmented the plot area by means of the layout function and successfully plotted my data in the appropriate segments. I cannot find how to put my graphic image onto the same plot. Searching the archives has shed little light on my challenge. Many thanks in anticipation. Gordon > version

Hi, I ran into the following peculiarity involving S4 method dispatch and namespaces. I develop a package which have a namespace and which depends on 'pixmap' package, which itself does not have a namespace. Now, in my package I have a class which has a slot for objects from class "pixmap" and I want to have a "plot" method for this new class. Not to clutter the

At one time (version 1.7), the code below used to work for converting and extracting based on the Date Time. In version 1.8.1, something changed I know, but I cannot for the life of me figure out what... Data: UserName,RequestDate,PO,OrderDate,ExpDelivDate,Vendor,Total "Woody, Jim",12/19/2002,AP15063,1/7/2003,2/10/2003,Ames ,8570 "Harrold,

I have released a SYSLINUX 2.06-pre3. This includes modifications to ppmtolss16 so that it should now be completely compliant with all modes of the PNM specification, raw/plain, PBM/PGM/PPM, with comment lines or without. ftp://ftp.zytor.com/pub/linux/utils/boot/syslinux/Testing/ Please test it out ASAP if at all possible. Since the fixes for -pre1 and -pre2 were pretty essential, I'd like

Hi, I'm a newbie in R world. I would like to develop an application that extract contour from objects of an image. - Is R able to manage raster data (i.e., images) ? - Is there a specific package in change of such management ? I'm specificaly interest in the Canny filter. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Emmanuel POIZOT CNAM/INTECHMER B.P. 324 50103 Cherbourg Cedex T?l : 33 (0)2 33

Hi I need to overlay two pixmaps (library (pixmap)). One, a pixmapGrey, is the basis, and on this I need to overlay a pixmapIndexed, BUT: the pixmapIndexed has set only some of its "pixels" to an indexed color, many of its pixels should not cover the basis pixmapGrey pixel, means, for this "in pixmapIndexed not defined pixels" it should be transparent. What would you

Hi, all. I searched a lot at mailing list, installed EBImage and gtk packages, but I couldn't make this simple work: How to add a image file (jpg or bmp ou gif) to an existing plot window (not plot over the image), like the code below (pseudo function add.image): plot(1:10,1:10,main="test") image = read.X("myimage.jpg") add.image(image, x.left=2, y.bottom=4,