Displaying 20 results from an estimated 500 matches similar to: "Installing netCDF module in R"
2008 Dec 23
1
NetCDF within R: installation assistance
Greetings. I am attempting to add NetCDF libraries within R, and have
failed. We have R version 2.8, and are running on a 64-bit Redhat Linux
2.6.18 kernel:
Red Hat Enterprise Linux Client release 5.2 (Tikanga)
Linux halfmoon.ncdc.noaa.gov 2.6.18-92.1.22.el5 #1 SMP Fri Dec 5
09:28:22 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
I have run the installation instructions found at
2009 Aug 13
1
ncdf
Dear all,
working with R under Linux, I am not able to install the ncdf-package.
The following appears:
install.packages("ncdf")
Warnung in install.packages("ncdf") :
argument 'lib' is missing: using
'/user/silke/R/x86_64-unknown-linux-gnu-library/2.6'
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
versuche URL
2010 Mar 24
1
install ncdf package
Dear R users
I am attempting to add lncdf_1.6.tar.gz libraries within R, and have
failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux
2.6.293.-60.fc10.x86_64.
I've run R CMD INSTALL ncdf_1.6.tar.gz
and I have the following
---------------
* Installing to library '/usr/lib64/R/library'
* Installing *source* package 'ncdf' ...
checking for gcc... gcc
2011 Sep 24
2
ncdf - install error
Dear all,
I'm having issues with the installation of the ncdf package. It returns a
non-zero exit status. Can anyone suggest what I should do next? FYI, I do
not have problems installing other packages.
Thanks.
Muhammad
* installing *source* package ?ncdf? ...
checking for nc-config... /usr/local/bin/nc-config
configure: creating ./config.status
config.status: creating src/Makevars
**
2010 Mar 09
1
ncdf installation
Friends,
I tried to install ncdf package in ubuntu with the following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include
-with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz
The installation was stopped throwing the following error. I tried to google
it but didnt find any solution. someone kindly write me what is going wrong.
**
2008 Jan 22
1
install ncdf package on a 64-bit machine
Dear All,
I recently got a 64bit machine and had netcdf-3.6.2 installed. Then I tried
to install ncdf package but got the following error message when using
netcdflib:
gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include
-I/home/ljin/share/R-2.6.1/include
-I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o
gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include
2006 Apr 25
0
need automake/autoconf help to build RnetCDF and ncdf packages
I imagine this "where are your header files" problem comes up in other
packages, so I'm asking this as a general R question. How should
configure scripts be re-written so they look in more places?
Briefly, the problem is that Fedora-Extras installs the header files
in a subdirectory /usr/include/netcdf-3 rather than /usr/include:
# rpm -ql netcdf-devel
/usr/include/netcdf-3
2010 Oct 09
1
ncdf installation in R
Hi All,
I am trying to install ncdf package on a Linux 64-bit machine.
I successfully installed netcdf using this command,
./configure --prefix=/home/challar/netcdf/ --disable-netcdf4
I then tried to install ncdf package in R
R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz
I get this
2008 Mar 13
0
need automake/autoconf help to build RnetCDF and ncdf packages
Greetings all,
I recently tried to install RNetCDF from within R (install.packages)
on Fedora Core 8 (with netcdf 3.6.2 and netcdf-devel 3.6.2 already
installed). This resulted in an error because the netcdf header files
are installed in /usr/include/netcdf-3 rather than /usr/include which
is where RNetCDF looks for them. This problem was described in a 2006
post (see below), but no
2002 Feb 14
1
netCDF
Thomas,
I'm using your package netCDF. Thanks for making
it and for leave it available for public use.
It took me a little while installing it, as my
netcdf library is libnetcdf.a (not libnetcdf)
and my library directory is not /usr/local/lib.
Finally, I was able to install with the following:
1. ln -s libnet.a libnet (in my usr/local/netcdf-3.5.0/lib directory)
2. R CMD INSTALL
1998 Sep 23
9
managing users from smbpasswd rather than /etc/passwd
I have samba installed on a web server (behind a firewall). It's working
fine with all the WINS networking here (eg, password authentication from
the NT servers, etc).
I (we) want this web server - a linux redhat 5.x box currently running
samba-1.9.18p8 - to have as few actual unix login accounts as possible.
What I want/need to do is to allow LOTS of people in the faculty here
2013 Mar 07
0
install Netcdf library (linux)
Hi All,
i'm on a debian linux 64bit,
i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
*
2013 Mar 07
1
install error - Netcdf library (linux)
Hi All,
i'm on a debian linux 64bit,
i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
*
2013 Feb 05
1
ncdf4 installation problem: undefined symbol [SEC=UNCLASSIFIED]
Hello,
I'm trying to install ncdf4 on RHEL 5.8, R version 2.15.1.
Previously installed is netcdf 3.6.2 from Red Hat, so I've compiled and installed netcdf 4.2.1.1 (with hdf5 and zlib as per install instructions, and also set --enable-netcdf4 option) into /usr/local.
When attempting to install ncdf4 it is failing with:
** testing if installed package can be loaded
Error in
2003 Jul 29
1
Sweave: pass scale parameter to includegraphics?
Hi all
I'm using Sweave and find it a treat. But one
question:
I use Sweave to create my pictures which are
automatically included into LaTeX. For example,
in the file test.Snw, I may have:
% LaTeX stuff
\begin{figure}
<<fig=true,width=5,height=5>>=
x1 <- seq(1,5, length=10)
x2 <- sin(x1)
plot(x1,x2)
@
\caption{Plot}
\end{figure}
% More LaTeX
This produces the LaTeX
2003 Mar 21
1
The best way to end up with TIFF {Was: end up with WMF)
Hi all
I posted a couple of days ago about how to end up with wmf files
eventually in R for linux.
The short answer was: you (probably) can't...and don't!
The journal in question also accepts TIFF files, I am told (it's
a physiology journal).
So I adjust my question: What is the best way to get TIFF files
out of R? It can't create them directly as far as I can tell.
2007 Nov 08
1
Mixing lty specifications in legend
Hi all
I have a plot with lines, one specified as (say) lty=1,
using standard line types, and another as (say) my
own spec: lty="51".
I can't get legend to display both. Toy example:
> plot(1~1)
> legend("topright", lty=c("51",1), legend=c("My own","Standard"))
Error in segments(x1, y1, x2, y2, ...) : invalid line type: must be
2004 Mar 29
1
White background in PS pictures
Hi all
I am using R to produce postscript pictures via the
postscript command. I have never had any problems...
until now, when I want to inlcude my .ps file is a
LaTeX document *without* a white background. (If
it's important, I'm using the prosper class with
the whitecross option, so the background in blue.)
I would like my .ps file to have a white background.
If I read the help
2004 Nov 11
1
substitute/paste question for using Greek in plot titles
Hi all
I am having troubles making sense of why code (1)
below fails but code (2) below works.
Code (1):
> phi.1 <- 1
> plot(0 ~ 0,
+ main=substitute(paste("A vaue for ",phi," = ",phival),
list(phival=phi.1)) )
Error in paste("The two deviances for ", phi, " = ", 2) :
Object "phi" not found
But this works:
Code (2):
>
2004 Jun 22
1
Using xtable with summaries of lm objects
Hi all
Suppose I do the following:
set.seed(1000)
library(xtable)
x <- runif( 10 )
y <- 1 + 2*x + rnorm( length(x) )
test.lm <- lm( y ~ x )
summary( test.lm )
xtable ( summary( test.lm ) )
The final xtable output follows:
% latex table generated in R 1.8.1 by xtable 1.2-2 package
% Tue Jun 22 09:56:36 2004
\begin{table}[ht]
\begin{center}
\begin{tabular}{rrrrr}
\hline
&