similar to: Sweave - documenting a long function

Hi, Here is a summary of the replies to my question yesterday about documenting a long function with Sweave. My thanks to those who replied. Friedrich Leisch suggested a work around which was copied to the mailing list so I wont repeat it here. This worked well. (I made a minor addition by adding braces around each chunk of code to make the output in the pdf file look a bit prettier. This seems

I have searched the r-help files but have not been able to find an answer to this question. I apologize if this questions has been asked previously. (Please excuse the ludicrousness of this example, as I have simplified my task for the purposes of this help inquiry. Please trust me that something like this will in fact be useful what I am trying to accomplish. I am using R 2.4.1 in Windows XP.)

http://bugzilla.mindrot.org/show_bug.cgi?id=160 ------- Additional Comments From Nicolas.Williams at ubsw.com 2002-03-13 09:10 ------- Created an attachment (id=40) Debug output, lsof output, etc... ------- You are receiving this mail because: ------- You are the assignee for the bug, or are watching the assignee.

http://bugzilla.mindrot.org/show_bug.cgi?id=188 ------- Additional Comments From Nicolas.Williams at ubsw.com 2002-03-28 02:43 ------- Created an attachment (id=55) Patch to do pw aging in kbd-interactive ------- You are receiving this mail because: ------- You are the assignee for the bug, or are watching the assignee.

Hi, I apparently was asleep at the wheel using scp, and accidentally copied a file onto itself. Scp generated an Input/Output error and did not perform the copy. However, now the file is corrupt. Is this a but? Is there anyway to fix the file I messed up? Thanks, Don Gathman 208.396.6675

if i write a funciton like this f <- function(x) Sweave("report.Rnw") and report.Rnw has an R chunk like this: <<>>= print(x) @ i get an error: 'Object "x" not found'. is there a way to avoid this without using assign to create a global variable? thanks, rafael

Dear all, Using: library(vegan) data(BCI) mod <- radfit(BCI[1,]) mod RAD models, family poisson No. of species 93, total abundance 448 par1 par2 par3 Deviance AIC BIC Null 39.5261 315.4362 315.4362 Preemption 0.042797 21.8939 299.8041 302.3367 Lognormal 1.0687 1.0186 25.1528 305.0629 310.1281

Full_Name: Kevin Coombes Version: 2.4.0 OS: Windows XP Submission from: (NULL) (143.111.22.24) I'm running R 2.4.0 on a Windows XP machine, with only the default packages loaded. Running Sweave or Stangle on the following Rnw file: -------------- % bug.Rnw \begin{document} Demonstrate an Sweave/Stangle bug. <<info>>= sessionInfo() @ <<getFDR>>= x <- 1 @

http://bugzilla.mindrot.org/show_bug.cgi?id=93 ------- Additional Comments From jprondak at visualmedia.com 2002-02-02 08:45 ------- Created an attachment (id=16) ssh-add.c patch to search ssh_config for IdentityFile(s) ------- You are receiving this mail because: ------- You are the assignee for the bug, or are watching the assignee.

I'm interested in building just the OpenSSH clients with MinGW. I figure that the OpenSSL libraries and just the ssh client should be relatively easy to build as they wouldn't require fork()/exec() and the like (well, ssh_askpass() uses fork()/exec(), but that's minor). The other clients, scp and sftp, will require #ifdef hacks so that they use the Windows spawn()/CreateProcess()

The hang on exit has become quite an issue in my organization(Sun and HP hosts). I see this note in the changelog which indicates that there will not be a fix for this problem: 20001129 - (djm) Back out all the serverloop.c hacks. sshd will now hang again if there are background children with open fds. Also, I am aware of the workaround as noted in the FAQ. However this workaround is not

Trying to Stangle / Sweave a file $ cat vignette.Rnw %\VignetteEngine{knitr} \documentclass{article} \begin{document} \end{document} results in a misleading error message: ~/tmp$ R CMD Stangle vignette.Rnw Error: Vignette engine package not specified Execution halted when what is missing is the full specification knitr::knitr; 'vignette engine package and function not specified' ?

Hi, I'm using the Sweave and I would like include codes of the R in my LaTeX file. I extracts the R code with Stangle (), whose name is Relatorio.R but I can't include it in the Latex file as an appendix. Suggests? Thanks, -------------------------------------- Silvano Cesar da Costa Departamento de Estat?stica Universidade Estadual de Londrina Fone: 3371-4346

Hello List, I have been using Sweave for my homework this last quarter and have been very impressed at how much time and effort it saves me. I, however, have run up against a problem which I have not been able to solve using any of the Sweave/LaTeX tricks I know. I work through my homework one problem at a time, typesetting equations and writing R code, etc. and occasionally use

Hi, Recently I saw a couple of cases in which the package vignettes were somewhat complicated so that Stangle() (or knitr::purl() or other tangling functions) can fail to produce the exact R code that is executed by the weaving function Sweave() (or knitr::knit(), ...). For example, this is a valid document that can pass the weaving process but cannot generate a valid R script to be source()d:

How exactly should I go about turning off annotation when running Stangle (Rtangle) with "R CMD Stangle myfile.Rnw"? Ideally I would like to be able to turn annotation off and on for individual code chunks, or maybe better, to annotate only named chunks. Are either of these things easily done? Is there some way to figure out this sort of thing without reading through the source code

Hi list, I need to process a Rnw file and and a csv file (both are encoded in UTF-8) under Windows XP (R Version 2.11.0, i386, mingw32). I can source and run the Rnw file: > Stangle("Bericht.Rnw") Writing to file Bericht.R > source(file("Bericht.R", encoding="UTF-8")) which runs fine, but running Sweave() failed: > Sweave("Bericht.Rnw")

Sorry, I forgot to include a reproducible example on my last e-mail but here it is: Since the file is large to be included here: The path to the foo.Rnw examples is: www.stat.umn.edu/~charlie/Sweave/foo.Rnw and is suppossed to produce a pdf like this one: http://www.stat.umn.edu/~charlie/Sweave/foo.pdf I have downloaded MiKTEX but I don't know how to make it work. Sweave and Stangle seem to

[I originally emailed this to Friedrich Leisch but got no response and I just wanted to make sure it made it in before release.] While working with Stangle(), I noticed a problem when using 'split = TRUE'. Particularly, when there are two chunks where one chunk's name is a prefix of another chunk's name, then the two chunks will be written to a single file rather than two

Dear expeRts, I have a master file master.tex containing the preamble and which inputs (via \input{chapter01}, \input{chapter02}, ...) chapters. The chapters are .Rnw files. My goal is to use patchDVI::SweavePDF to compile the chapters (say, chapter.Rnw) individually (each chapter starts with sourcing Sweave preliminary settings). The first problem is the following. If I execute (in the shell)