similar to: Using RSPerl with add-on package ctest and named parameters

Hi, Prof Duncan I am sorry to report to a wrong place. But I am lucky to meet you by chance, right? Thanks first ^^ 1. The variable y1 is an array get from Perl, each element is from a database (the type should be numeric). Here is the code for that. $query = qq{ select exonCount, count(hsEnsGene) as geneCount from countTop1000ks group by exonCount order by exonCount;

Hi, Prof Duncan I am sorry to report to a wrong place. But I am lucky to meet you by chance, right? Thanks first ^^ 1. The variable y1 is an array get from Perl, each element is from a database (the type should be numeric). Here is the code for that. $query = qq{ select exonCount, count(hsEnsGene) as geneCount from countTop1000ks group by exonCount order by exonCount;

Dear R-helpers, I am running well Perl and R on my Debian Linux, and I tried RSPerl. Installation is ok and all simple functions run well. But I have a problem to call the "lines" function. I would like to draw an histogram with the density curve on. Is is OK in R with the command: >x<-rnorm(1000) >hist(x,prob=T) >lines(density(x)) for example. Now, I have a Perl script

Run this: >p <- c('a', 'c', '', ''); a <- c(10, 20, 30, 40); d1 <- >data.frame(Promoter=p, ip=a) # Note duplicate empty names in p. >p <- c('b', 'c', 'd', ''); a <- c(15, 20, 30, 40); d2 <- >data.frame(Promoter=p, ip=a) >all <- merge(x=d1, y=d2, by="Promoter", all=T) >all <-

Hi, Figure 13 of Emmanuel Paradis's "R for Beginners" was produced by termplot working on an aov object. The lower right-hand plot is labelled "Cook's distance plot", and I'd really like to produce a similar type of figure, but in a totally different context. (I'm not even sure what this kind of figure is called, perhaps an "impulse plot", where

Hi, Having dipped my toe into R a few times over the last year or two, in the last few weeks I've been using it more and more; I'm now a thorough convert. I've just joined the list, because although it's great, I do have this problem... I'm using linear discriminant analysis for binary classification, and am happy with the classification performance using predict(). What

Hi, Following on from suggestions made last week, I decided to install R 2.1.0 on my Linux machine. I'm running into a problem there however, as shown: make[1]: Entering directory `/d0/home/fgibbons/tmp/R2.1.0/R-2.1.0/src/library/Recommended' make[2]: Entering directory `/d0/home/fgibbons/tmp/R2.1.0/R-2.1.0/src/library/Recommended' begin installing recommended package VR WARNING:

How can I extract the linear discriminant functions resulting from a LDA analysis? The coefficients are listed as a result from the analysis but I have not found a way to extract these programmatically. No refrences in the archives were found. Thank you very much, Stefan

Hello, I tried the R-Sig-Mac list with this query, but had no takers. I hope that the following isn't too far off the mark for this list. Many thanks in advance if someone can help me out! Quick summary: I can't get RSPerl working on a PPC G5 with the pre-compiled binary for Mac OS X, but it does work if I compile R from source with the "--enable-R-shlib" flag. If I

Hi, installation of RSPerl works fine without errors. Running RSPerl does not work at all. If I start R, and then enter this command: library(RSPerl) this error appears: ----------------- > library(RSPerl) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library "/usr/local/lib/R/library/RSPerl/libs/RSPerl.so":

Dear list, I have updated to version R-2.10.0. When I try to load the RSPerl library I get the following error: > library(RSPerl) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/usr/local/lib/R/library/RSPerl/libs/RSPerl.so': /usr/local/lib/R/library/RSPerl/libs/RSPerl.so: undefined symbol: boot_DB_File__Glob Error: package/namespace load failed

Hi, I'm trying to install de RSPerl module and i have some problems trying to test it. I've tried to contact with the author but the e-mail address seems not to exist. Hope that anyone in this list could explain me a little about this problem. I have a bash shell and what i do is the following: #PERLLIB=/usr/lib/R/library/RSPerl/share/blib/arch:/usr/lib/R/library/RSPerl/share/blib/lib #

Hello, Has anyone gotten RSPerl ( (http://www.omegahat.org/RSPerl/) to work on Mac OS X? After installing RSPerl, I run the test program (or, even simpler, perl -e 'use R;') and get the following error: dyld: perl Undefined symbols: _RPerl_createRProxy _RPerl_discardRProxy _RPerl_getProxyValue _RPerl_getReferenceName _addPerlConverterRoutine _fromPerl _tryEval _userLevelConversionToPerl

Hi, I am having problems installing RSPerl 0.92-1 in my Mac OSX 10.5.1. I?ve installed correctly R-2.6.1 with the .mpkg. I run the next command: <R CMD INSTALL --configure-args=' --with-in- perl ' RSPerl> And the next error message appears: RSPerl * Installing to library '/Library/Frameworks/R.framework/Resources/ library' * Installing *source* package

I know that I'm a fool for trying to get this working under windows but I'm obliged. Note I have R 2.6.1 and the latest cygwin. I'm running winxp sp2. 1) If I issue: R CMD INSTALL RSPerl_0.92-1.tar.gz, it fails as such ---------- Making package RSPerl ------------ ********************************************** WARNING: this package has a configure script It

If anyone can help it would be very much apreciated... System RedHat 9 R installed as # ./configure --enable-R-shlib # make # make install and R seems to work fine ... Then I do # R INSTALL --clean --configure-args='--with-in-perl' RSPerl_0.5-7.tar.gz # export R_HOME=/usr/local/lib/R # cd /usr/local/lib/R/library/RSPerl/examples/ # perl -I

Hi, I've just started using RSPerl. Though also tests in directory "/usr/local/lib/R/library/RSPerl/tests/" are passed successfully, I meet the problem with the following codes; use strict; use warnings; use R; use RReferences; my @array1=1..10; my @array2=1..39; &R::initR("--silent"); &R::library("RSPerl"); my $tt=&R::call("t.test",

Hi I have R 2.11.1 installed at Fedora 13. when I tried to install RSPerl by command line sudo R CMD INSTALL ~/Download/RSPerl_0.92-1.tar.gz It failed with following errors, could some one offer help? Thanks Yuan Converters.c: In function ?PerlAllocHomogeneousVector?: Converters.c:1003: error: ?elementType? undeclared (first use in this function) Converters.c:1004: error: ?SVt_IV? undeclared

I am new to R. Trying to find out how lda() {in MASS R1.8.0 Windows} was implemented in R. Does anyone know where to find out lda source code ? Thanks. Wei

Folks, I am having trouble installing RSPerl on a redhat 6.x box, in which i am an ordinary user, the R install is done as a shared library. I get the following message when i do a R INSTALL RSPerl Any help would be greatly appreciated, thanks & regards Krishna ---------------------------------------------------------------------------- Support R in Perl: updating cache ./config.cache