similar to: possum sleeping: thanks and fisher.test() FEXACT error

This is a bad bug as reported by Robin Hankin, it is still in "R-patched" ... ##- From: Robin Hankin <r.hankin@auckland.ac.nz> ##- To: r-help@stat.math.ethz.ch ##- Subject: [R] possum sleeping: thanks and fisher.test() FEXACT error ##- Date: Thu, 13 Jun 2002 16:46:26 +1200 ## ..... ## Example slighlty modified (MM) d4 <- matrix(c(0, 0, 0, 0, 0, 0, 3, 0, 1, 0, 0, 0, 0, 0,

dear helplist, my student has fifty trees, numbered one to fifty, and a vector recording which tree a certain possum slept in on 12 nights. R> c [1] 3 14 17 22 26 26 17 40 43 25 46 46 R> Thus it slept in tree #3 on Monday, then tree #14 on Tues, and so on. I wish to test the null hypothesis that the animal chooses trees randomly; try R> table(c) c 3 14 17 22 25 26 40 43 46 1 1

Hello experts I have a thing which I can't vectorize. Can any gurus out there help? This is my truncated dataset; it is a dataframe of five possums and which tree they slept in on three days. R> dataset p14 p88 p82 p90 p98 1 6 7 5 1 3 2 8 9 10 1 11 3 8 7 12 13 14 I can manipulate it with simple functions fine: R> f function(n){n+1000} R> f(dataset)

I posted this last night but I think I figured out the problem. I checked on the underlying equation for the Fisher Exact Test for tables greater than 2X2. It looks like I have an insane amount of factorials to be multiplied. Is that problem? Is it an overflow issue? Jeff Last night’s post: I just a ran a fisher.test on a 9x5 table and received the following message

(CC'ed to R-bugs ``for the record'') >>>>> "BDR" == Prof Brian D Ripley <ripley@stats.ox.ac.uk> writes: BDR> On Thu, 13 Jun 2002, Martin Maechler wrote: >> >>>>> "MM" == Martin Maechler >> <maechler@stat.math.ethz.ch> writes: >> >> >>>>> "BDR" ==

I just a ran a fisher.test on a 9x5 table and received the following message Error in fisher.test(apaslg.t) : FEXACT error 30. Stack length exceeded in f3xact. This problem should not occur. I agree. The problem should not occur. I did some searching but only found other reports of the problem. Does anyone know of a fix? Jeff Internal Virus Database is out-of-date.

Dear all, I’m having an awkward problem in R. When I write the command Fisher.test(school.data,workspace=2e+07), where school.data is the matrix corresponding to the data set, I get the error message: FEXACT error 7. LDSTP is too small for this problem. Try increasing the size of the workspace. Increasing the workspace: Fisher.test(school.data,workspace=1e+10), I

Hello, I have an error message that doesn't seem to make sense in that having read the R documentation I was under the impression that R was able to grab as much memory as it needed, and has been able to do so for some time, so the advice given below about increasing the size of the workspace is redundant. If I'm right, does anyone have a solution to the problem of the size of

Dear all, perhaps I am using princomp.formula and prcomp.formula in a way that is not documented to work, but then the documentation just says: formula: a formula with no response variable. Thus, to avoid a lot of typing, it would be nice if one could use '.' and '-' in the formula, e.g. > library(DAAG) > res <- prcomp(~ . - case - site - Pop - sex, possum)

Referring to "Using R for Data Analysis and Graphics" by J H Maindonald, and available from the R site, I found the example on p.30 non-working: > stem(qqnorm(possum$hdlngth)) Error in stem(qqnorm(possum$hdlngth)) : 'x' must be numeric Since qqnorm(possum$hdlngth) plots, and > class(possum$hdlngth) [1] "numeric" , the problem must be here: >

Hi folks, I'm trying to call an R function (fisher.test) in my program for like a billion times! Though my program is in Python and I feel that using rpy2 to interface R to python doesn't give me satisfactory performance. So I looked into R code and found out that fisher.test is actually a wrapper around another function called fexact which is implemented in C. Using Cython I managed to

Dear All, I am using fexact.c on a C++ program I wrote. To minimize dependencies on other files (e.g., to not need to include R.h and ctest.h ---now I only include the R files Boolean.h, Constants.h, and Memory.h), I have re-written all declarations of Sints as ints and, what is potentially more serious, I have re-written the line (lines 329 and 330, in fexact.c on R-1.6.1) /* IMAX is the

Hello, I'm using R to apply Fishers exact test to a whole pile of contingency tables, and I've run into the bug shown below. regards, Francis -- > dat1 = matrix(c(0,1,0,1,0,0,1,0,0,0,1,0,1,0,0,1,0,0,0,1,0,1,0,0,1,0,0,0,0, 1,1,0,0,1,0,0,1,0,0,1,0,0,3,0,0,2,0,0,1,0,0,0,1,0,0,2,0,0, 2,0,0,1,0,1,0,0,3,0,0,2,0,0,0,1,0,5,0,0,0,1,0,1,0,0), nrow=3) >

C?dric Finet wrote: > > I thank you for your answer but I do not understand yet why the Fisher?s exact > test does not work. And why is a "negative key". > > C?dric Finet > Running the original TOMS643 fortran code (R uses an f2c translation of this) says: FEXACT ERROR: 30 Stack length exceeded in f3xact. This problem should not occur. The integer hash key is

Hello, I have a simple question about using the aov function syntax (ie. * + or :) for the interaction of 2 factors. I have read the help files, and researched other sites, and have included my source files. My goal is to measure the signifigance of the interaction between population and condition (aka. population:condition). I can't seem to figure it out. 1. In the first example the

hello. I'm a student that work on R.(version 1.7.0) I need to some data frames such as "possum","Beams"'"kiwishade","dolphins",... . I typed help.search("possum") and so on,but the response was "No help files found with alias or title matching 'possum' using fuzzy matching.". I dont know what is "fuzzy matching"

Hi all, I'm just a beginner with R but I have not been able to search for any relevant answer to my problem. I apologize if it has in fact been asked before. Recently I've realized that I need to combine hundreds of pairs of data frames. The filenames of the frames I need to combine have unique strings. This is my best guess as to the approach to take: filenames<-list.files()

I have a small LAN. The entire system is within my view - all the hosts, the switch and the wire. If someone is in a a position to do a "man in the middle" attack, there's no need - they already have me. Over the other side of the room, and beside my desk, I have test systems. I use disk caddies (see www.vipower.com for examples) and can switch operating systems in about the

Hello, I have a question regarding how to subset/select parts of a data frame (matrix) in order to plot data associated only with this subset. Specifically I have a large data frame in which one column contains ID values (dates), and other columns contain data I would like to plot (temperature, light, etc.). I would like to break up this large matrix so as to plot data associated

Dear Helplist I have a dataframe that holds the Southern Oscillation Index over the last few years: R> soi[1:3,] Year Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec 1 1993 -9 -10 -12 -24 -9 -18 -11 -18 -9 -15 -1 0 2 1994 -2 -1 -14 -26 -13 -12 -18 -20 -19 -16 -9 -15 3 1995 -4 -5 2 -19 -9 -3 4 -1 3 -2 0 -8 QUESTION: how do I coerce reshape() into giving me this: