Displaying 20 results from an estimated 1100 matches similar to: "errors in integrate function?"
2010 Mar 31
2
Simplifying particular piece of code
Hello, everyone
I have a piece of code that looks like this:
mrets <- merge(mrets, BMM.SR=apply(mrets, 1, MyFunc, ret="BMM.AV120",
stdev="BMM.SD120"))
mrets <- merge(mrets, GM1.SR=apply(mrets, 1, MyFunc, ret="GM1.AV120",
stdev="GM1.SD120"))
mrets <- merge(mrets, IYC.SR=apply(mrets, 1, MyFunc, ret="IYC.AV120",
2010 Apr 21
2
Maximum Likelihood Estimation in R
Dear R-Help,
I also send the following post by e-mail to you, however I try to post it
here aswell. My name is Henrik and I am currently trying to solve a Maximum
Likelihood optimization problem in R. Below you can find the output from R,
when I use the "BFGS" method:
The problem is that the parameters that I get are very unreasonable, I would
expect the absolute value of each
2013 Feb 11
2
How to plot doubles series with different location using plotCI
Dear list
members,
I would
like to create two series of plotted mean values and error bars, yet with
different locations along the x-axis.
Plotting of
first series using plotCI with the standard arguments goes without any problem.
However I do not succeed to add the second series in the same plot, which
should be horizontally shifted from the first series along the x-axis. The “add=TRUE”
2012 Jun 01
4
[PATCH v3] virtio_blk: unlock vblk->lock during kick
Holding the vblk->lock across kick causes poor scalability in SMP
guests. If one CPU is doing virtqueue kick and another CPU touches the
vblk->lock it will have to spin until virtqueue kick completes.
This patch reduces system% CPU utilization in SMP guests that are
running multithreaded I/O-bound workloads. The improvements are small
but show as iops and SMP are increased.
Khoa Huynh
2012 Jun 01
4
[PATCH v3] virtio_blk: unlock vblk->lock during kick
Holding the vblk->lock across kick causes poor scalability in SMP
guests. If one CPU is doing virtqueue kick and another CPU touches the
vblk->lock it will have to spin until virtqueue kick completes.
This patch reduces system% CPU utilization in SMP guests that are
running multithreaded I/O-bound workloads. The improvements are small
but show as iops and SMP are increased.
Khoa Huynh
2009 Aug 20
1
lattice xyplot strip colors and location
Hi all,
I've been trying (unsuccessfully) to modify an xyplot I created using the lattice package. I would like to change default strip colors and locations.
I started with numeric data in 4 columns, which look like this:
0.25 2 1 32
0.25 2 2 30
0.25 2 3 27
0.25 2 4 23
0.25 2 5 17
0.25 3 1 30
0.25
2006 Nov 07
1
Better way to create tables of mean & standard deviations
Hi
I'm trying to create tables of means, standard deviations and numbers
of observations (i) for
each laboratory (ii) for each batch number (iii) for each batch at
each laboratory for the attached data.
I created these functions:
summary.aggregate <- function(y, label, ...)
{
temp.mean <- aggregate(y, FUN=mean, ...)
temp.sd <- aggregate(y, FUN=sd, ...)
temp.length <-
2017 Oct 10
2
small files performance
2017-10-10 8:25 GMT+02:00 Karan Sandha <ksandha at redhat.com>:
> Hi Gandalf,
>
> We have multiple tuning to do for small-files which decrease the time for
> negative lookups , meta-data caching, parallel readdir. Bumping the server
> and client event threads will help you out in increasing the small file
> performance.
>
> gluster v set <vol-name> group
2008 Sep 05
2
typo in cov()? var() fails on NA in R 2.7.2 but not R 2.6.1
I recently started using R 2.7.2, and noticed a surprising change in
the behavior of var() on NA data:
R 2.6.1 (Patched), 2007-11-26, svn.rev 43541, x86_64-unknown-linux-gnu:
> stdev(rep(NA,3), na.rm=F)
[1] NA
> stdev(rep(NA,3), na.rm=T)
[1] NA
> var(rep(NA,3), na.rm=T, use="complete.obs")
[1] NA
R 2.7.2 (Patched), 2008-09-02, svn.rev 46491,
2002 Mar 01
3
calculating std err (SEM)?
Is there a "canned" function in R for finding the standard error of the
mean? I have tried
> sem <- function(x) c(mean =mean(x),
+ SEM = stdev(x)/sqrt(length(x)))
> sem(pnet.lai)
Error in sem(pnet.lai) : couldn't find function "stdev"
It looks like there is no stdev function in R
Thanks,
Kirk
Kirk R. Wythers email: kwythers at umn.edu
University of
2017 Oct 10
0
small files performance
I just tried setting:
performance.parallel-readdir on
features.cache-invalidation on
features.cache-invalidation-timeout 600
performance.stat-prefetch
performance.cache-invalidation
performance.md-cache-timeout 600
network.inode-lru-limit 50000
performance.cache-invalidation on
and clients could not see their files with ls when accessing via a fuse
mount. The files and directories were there,
2009 Sep 30
1
Optim(...) estimate of stDev far too low
R-help,
I'm just trying to find the ML (maximum likelihood) estimates
of the mean and standard deviation of a set of observations:
>xx=c(2.5,3.5,4,6,6.5,7.5)
fn<-function(params,x=xx)
{
media<-params[1]
st <-params[2]
pdf=-sum(dnorm(log(xx),log(media),st,TRUE))
return(pdf)
}
optim(c(mu,stdev),fn,method="L-BFGS-B",lower=c(0.001, 0.001)
,upper = rep(Inf, 2),
2005 May 18
4
standardization
SAS Enterprise Miner recommendeds to standardize using X / STDEV(X)
versus [X ? mean(X)] / STDEV(X)
Any thoughts on this? Pros Cons
Philip
2010 Nov 04
5
ggplot output
Dear All,
I have this script:
dat <- data.frame(Month = hstat$Date,C_avg = hstat$C.avg,C_stdev =
hstat$C.stdev)
ggplot(data = dat, aes(x = Month, y = C_avg, ymin = C_avg - C_stdev, ymax =
C_avg + C_stdev)) +
geom_point() +
geom_line() +
geom_errorbar()
dat <- data.frame(Month = hstat$Date,K_avg = hstat$K.avg,K_stdev =
hstat$K.stdev)
ggplot(data = dat, aes(x = Month, y = K_avg,
2009 Sep 28
2
probability density function for maximum values in repeated finite samples from a normal distribution??
this is probably not really a R specific question, if so apologies for
off-topic posting:
I'm interested in the probability density function of the maximum values
from repeated samples of size N from a normal distribution:
smp <- rnorm(N, meanval, stdev)
with some mean 'meanval' and standard deviation 'stdev'.
I would like to know what is the frequency distribution of
2018 Mar 20
0
Gluster very poor performance when copying small files (1x (2+1) = 3, SSD)
Excellent description, thank you.
With performance.write-behind-trickling-writes ON (default):
## 4k randwrite
# fio --randrepeat=1 --ioengine=libaio --gtod_reduce=1 --name=test --filename=test --bs=4k --iodepth=32 --size=256MB --readwrite=randwrite
test: (g=0): rw=randwrite, bs=(R) 4096B-4096B, (W) 4096B-4096B, (T) 4096B-4096B, ioengine=libaio, iodepth=32
fio-3.1
Starting 1 process
Jobs: 1
2009 Aug 11
1
Paste symbol and calculation in plot
I'm trying to annotate a density plot and I would like to have R calculate the
standard deviation and place it in the plot next to the standard deviation symbol
"sigma". I can successfully use the text command to paste "StDev =",round(sd(Data),digits=3))
on the plot. However, I have trouble when I want to replace "StDev" with the Greek
symbol sigma (See code
2006 Feb 20
2
formatting results from a function argument
Hello all,
I have a simple function which calculates summary statistics of a dataset
in terms of a factor (say area).
> x = data.frame(Area = c(rep("cleanup", 5), rep("ref", 5)), TcCB =
c(rnorm(5)+2, rnorm(5)));x
Area TcCB
1 cleanup 2.5829747
2 cleanup 2.6796868
3 cleanup 2.5437094
4 cleanup 2.8453616
5 cleanup 1.1789683
6 ref 1.0140391
7
2006 Oct 26
4
Header of dataframe
Hi
I am fairly new to R and I would appreciate some help to hopefully a
trivial problem.
I created a function:
summary.aggregate <- function(y, ...)
{
temp.mean <- aggregate(y, FUN=mean, ...)
temp.sd <- aggregate(y, FUN=sd, ...)
temp.length <- aggregate(y, FUN=length, ...)
temp <- data.frame(cbind(mean=temp.mean$x,stdev=temp.sd$x,n=temp.length$x))
}
this outputs e.g.:
2008 Jun 09
1
Student Distribution and Funtion qt
Hello,
I am trying to calculate and plot mean and confidence intervall for a set of data. This is the code that I am currently using:
means <- sapply(data, mean, na.rm=TRUE)
n <- sapply(data,length)
stdev <- sqrt(sapply(data, var, na.rm=TRUE))
ciw <- qt(0.98, n) * stdev / sqrt(n)
par(mgp=c(2,0.6,0), las=2, fin=c(7,3), mai=c(1,0.5,0.2,0.2), cex=0.8)
plotCI(x=means, uiw=ciw,