similar to: R gnome produces errors?: a clue!

I'm totally confused by the following: 1. I start R simply by typing R on the shell and the following works with no problems: > library(MASS) > a <- lda(x=mod23puriflda[,2:5],grouping=mod23puriflda[,6],CV=F) > summary(a) Length Class Mode prior 23 -none- numeric counts 23 -none- numeric means 92 -none- numeric scaling 16 -none- numeric lev 23

I am getting the following erro rmessage in ordistep. I have a number of similarly structured datasets using ordistep in a loop, and the message only occurs for some of the datasets. I cannot include a reproducible sample - the specific datasets where this is occur ing are fairly large and there are several pcnm's in the rhs of the formula. thanks for any pointers that may allow me to

Saving lda.default as text files from within gui="none" and from within gui="gnome" and comparing afterwards with diff, I get: alobo at humboldt:> diff lda.default.gnome.txt lda.default.nognome.txt 1c1 < function (x, grouping, prior = proportions, tol = 1, method = c("moment", --- > function (x, grouping, prior = proportions, tol = 1e-04, method =

I tried to build the gold plugin and receive the errors posted below. I checked out the gold plugin using "cvs -z 9 -d :pserver:anoncvs at sourceware.org:/cvs/src co src," as documented on llvm.org. Is that version bleeding edge and perhaps not stable? The first errors have to do with the libtool version. I have libtool 2.2.6 on my system, which is what the README-maintainer-mode

Hello I try to fit a LDA and RDA model to the same data, which has two classes. The problem now is that the training errors of the LDA model and the training error of the RDA model with alpha=0 are not the same. In my understanding this should be the case. Am I wrong? Can someone explain what the reason for this difference could be? Here my code: LDA model: =========== % x is a dataframe tmp =

If save() fails because an object is not found, it should not overwrite an existing file. > a <- 1:9 > save(a, file = "a.rda") > rm(a) > load("a.rda") > a [1] 1 2 3 4 5 6 7 8 9 > rm(a) > save(a, file = "a.rda") Error in save(a, file = "a.rda") : object 'a' not found > load("a.rda") Error in

The attached patch to the qemu emulation of the pcnet hardware fixes several problems. It will now only read and write a transmit or receive descriptor once. It will correctly handle transmitting frames with more than two fragments. It will discard oversize frames instead of corrupting memory. I have tested all the changes I have made and even seen an improvement in receive performance from

I'm encountering excruciatingly slow load times for character vectors in R 2.6.0-- up to 30sec for a 15K file that contains a no-attributes character vector of length ~1e4 and object size ~0.5MB. In R 2.5.1, repeated loads of the same set of files are near-instantaneous. The problem is proving tricky to reproduce consistently from scratch, so I have attached the 3 files used in the examples

Dear all, I'm performing RDA on plant presence/absence data, constrained by geographical locations. I'd like to constrain the RDA by the "extended matrix of geographical coordinates" -ie the matrix of geographical coordinates completed by adding all terms of a cubic trend surface regression- . This is the command I use (package vegan): >rda(Helling ~

I've tried a few things both with prcomp(), and rda() and its friends in vegan (including biplot.rda and ordiplot), but can't find a solution. I'd like to associate subsets of the points in a resulting biplot ("sites" in the rda object) with different plotting colors/text styles to emphasize certain sets of points. I can't figure out how to keep the arrows (for

Hello R user, I have four data sets in dir "D:/Bharat Warule/Rdata_file" which are output_data_prod_1.rda, output_data_prod_2.rda, output_data_prod_3.rda, output_data_prod_4.rda. Each data set is huge size like number of rows 343297 and columns are near to 50. For example: x1 <- data.frame(x11=c(1,2,3,4,5),x112=c(10,10,10,10,10)) x2 <-

Dear all, I did a RDA and when I looked to the signification of the test with permutest, the output was non-significant. But when I used the envfit function, some of the vectors are significant. All the test's conditions are respected. What it means? Is it an error in the script? Commands and output: > permutest(rda.ind, perm=999, first=TRUE) Permutation test for rda  Call:

R-1.4.0 seems to have changed the way delay() works, or perhaps it is the way library() works that nullifies the advantages of using delay() in a package. It seems that the process of loading a package evaluates each object provided by that package, and so in particular, the delay()ed object is evaluated and brought into memory. For example generating a test example, where test/R/functions.s is:

Dear developeRs, my package FrF2.catlg128 holds large catalogues and is supposed to gain additional ones. All the catalogues are intended for the user. So far, the catalogues were stored in the data directory, and LazyData was "no". I understand that this is not considered wise any more (if it ever was), so that I want to change to LazyData "yes" with the next release

Dear All: It was saved, but there was a space somewhere. So it works for me now. I do have another similar problem. I saved an R data file save(datahs0csv,file=" F:\Fall_2017\5-STA574\2-Notes\1-R\1-R_new\chapter4-Entering_Data/datahs0csv2 .rda") *The new R data file "*datahs0csv2.rda*" is in the directory.* I tried to load the file "" to R, but I got an error

Hi, I have two .rda files that I need to include in a package. I've placed them both in a data directory after save() the are around 150Kb each. When I try to check the package I get the following warning Warning: large data file(s) saved inefficiently: size ASCII compress zagoskin.rda 137Kb FALSE none Note: significantly better compression could be obtained

Hi, Recently added to doc/NEWS.Rd: 'R CMD check' now gives a warning rather than a note if it finds inefficiently compressed datasets. With 'bzip2' and 'xz' compression having been available since R 2.10.0, there is no excuse for not using them. Why isn't a note enough for this? Generally speaking, warnings are for things that are dangerous, or unsafe,

The object you load has the same name as the object you saved. In this case datahs0csv and not the name of the file sans .rda On Di., 12. Sep. 2017, 21:26 AbouEl-Makarim Aboueissa < abouelmakarim1962 at gmail.com> wrote: > Dear All: > > > It was saved, but there was a space somewhere. So it works for me now. > > I do have another similar problem. > > I saved an R

There is a recurring need for importing large csv files quickly. David Baird's dataload is a standalone program that will directly create .rda files from .csv (it also handles many other conversions). Unfortunately dataload is no longer publicly available because of some kind of relationship with Stat/Transfer. The idea is a good one, though. I wonder if anyone would volunteer to

Dear all community, My issue is related to the R package (made4) that permits me to calculate the RV coefficient of co-inertia. However, it is a theoretical question. And if I am not mistaken, the list Usenet groups sci.stat.consult is not currently active. Let me explain briefly: Through different microbiota datasets, I have plotted PCoA, db-RDA and sPLS-DA using 3 different types of