similar to: [ 1.4.0] Compilation with 64 bits on Irix

Dear all, I have an ontology which I would like to load in R to then compute the minimum distance between elements. Since this ontology is not only DAG, the problem is non trivial and therefore decided to use R with the powerful e1071 library (allShortestPaths) to do that. That method requires to provide a distance matrix between the various objects. My ontology contains 32768 objects and

Hello, Perhaps this is a bug, but I thought I'd start with R-Help. I'm trying to compile R-1.4.1 on a new Sun-Blade running Solaris 2.8 ( I got it running with no problem on older SUNs) I get the following error after doing the usual ./configure and make: gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c arithmetic.c -o arithmetic.o

Thanks to Peter Dalgaard and Suchandra Thapa for answering my question! Before I settle on a particular option, I'd like to ask one more question if I may: Are there any practical advantages to compiling R to 64-bit vs 32-bit? Regards, Andy > -----Original Message----- > From: Peter Dalgaard BSA [mailto:p.dalgaard at biostat.ku.dk] > Sent: Thursday, April 18, 2002 4:19 PM > To:

Hi, Thanks to Profs. Ripley and Tierney for their tips, I compiled zlib from source and gotten further. Here's where I get stuck, when it tries to compile the tcltk package: ld32: FATAL 12 : Expecting n32 objects: /usr/local/lib/libtcl8.3.so is n64. Now I'm confused. Sounds like 32-bit vs. 64-bit problem. What can I do at this point? (This is on Irix.) Regards, Andy

Dear R-help, I'm trying to compile R-1.4.1 on Irix, and run into the following error when making R.bin: The linker (ld32) complained that "gzeof", "gzgetc", "gztell", and "gzseek" are unresolved symbols in connection.o. Are these supposed to be in libz.a? My suspicion is that maybe the libz.a on this system is outdated. Any hints? TIA! Andy

Dear R-help, I've managed to crash R on Irix when I called a Fortran subroutine that calls R's random number generator, as described in Section 5.6 of the R-exts manual. (It does say in that section that this is not guaranteed to be portable...) (Well, R doesn't crash when calling the RNG. It crashed when the random number generated isn't inside the unit interval.) Can anyone

Full_Name: Tim Middelkoop Version: 0.64.0 OS: IRIX 6.3 on O2 Submission from: (NULL) (128.119.88.192) Various IRIX complile issues src/nmath/pnt.c IRIX cc does not like double negatives Makeconf,config.site,etc/Makeconf f77 pic hack, should change Makeconf.in or other... change -PIC with -KPIC enjoy, tim... === diff -ru orig/R-0.64.0/src/nmath/pnt.c R-0.64.0/src/nmath/pnt.c ---

Hello Laurent, Ray and Greg, I tried the gmake settings. Yet, I still got an Error code 1 message when I run the test. running regression tests don't know how to make ../library/base/R/base (bu42). *** Error code 1 (bu21) Thanks you if you have any idea. Manuel -----Message d'origine----- De : Laurent Gautier [ mailto:laurent at genome.cbs.dtu.dk <mailto:laurent at

Hello, Is it true that R-1.6.0 compiled under 64-bit is less efficient on using memory than compiled under 32-bit? Here are my observations: 1. I have an SGI IRIX box (2Gb RAM) running 32-bit version of R-1.5.0. It CAN handle a large data set (an 1111000 * 18 array). 2. For the same data set, on an IBM AIX 64-bit box (64GB RAM) with the new version of R-1.6.0, it gives an out of memory error.

R 0.63.2, compiled using SGI cc and f90 on Irix 6.5 gives: > is.na(NA) [1] TRUE # OK > is.na(c(1,NA)) [1] FALSE FALSE # expected FALSE TRUE > is.nan(NaN) [1] FALSE # expected TRUE > is.nan(1/0) [1] FALSE # ditto The above functions work correctly for R compiled with gcc and g77 on an Irix 6.2 system. The Irix 6.5 release notes

dear All, I am operating on an SGI machine with 16 GB memory, and I have unlimited resource access. However, when I run the following command x<-matrix(NA,32768,32768) I get the following error Error in matrix(NA,32768,32768) : cannot allocate vector of length 1073741824 I have compiled R 1.4 myself, using the default ./configure option. I have the feeling that perhaps I shall recompile it

Why is there a limit on the amount of vector heap one can use ? I am operating on a 16GB SGI (O2000) machine. Furthermore, is there any way to make R using multiple threads ? Regards Luca p.s. I understand that I might be pushing a bit R beyond its most common operation set. However, also understanding where the limits of R are, is a good excercise.

Hello, I successfully compiled 0.61.3 on SGI Irix 5.3 (CC). But there is a syntax bug in src/graphics/graphics.c. I append a diff. Please, have a look wether the fix is correct! (I'm not shure :-) Thanks for the SHELL variable in the Makefile's. Please, don't forget about the problem with externally installed regular expression libraries (e.g. librx). Perhaps you can improve the

Hello, I installed R on an Irix 5.3 system. Obviously the Irix libraries don't contain functions for POSIX regular expressions. Is it possible use the regex, or better rx libraries from GNU, and how can I do it? Or do I have to live without functions using POSIX regular expressions (e.g. apropos, methods)? I have no GCC and I won't install it ... Thanks in advance, --

Full_Name: Leo Caves Version: 0.65.0 OS: SGI/IRIX 6.5 Submission from: (NULL) (144.32.72.76) using default configure under SGI/IRIX 6.5. (I switched to gnumake, after initial problems, this might not be necesssary). the make rule for creating dependencies is wrong for the SGI C compiler. The rule assumes that cc -M file.c -o file.d works (it doesn't). One needs to explicitly capture stdout

Hey Guys, I'm trying to install R on an SGI IRIX 5.3 machine. I'm having trouble getting R to use POSIX regular expressions. Here is the error message I get when I run help: > help() Error in gsub(pattern, replacement, x, ignore.case, extended) : POSIX regular expressions not available I looked through the R-help archives and I found a few tips concerning the problem. I tried them

Hi, I am trying to install R 1.4.1 on and SGI using 64 bit. When I configure I get... R is now configured for mips-sgi-irix6.5 Source directory: . Installation directory: /usr/local C compiler: cc -64 -OPT:IEEE_NaN_inf=ON -g C++ compiler: CC -OPT:IEEE_NaN_inf=ON -g FORTRAN compiler: f77 -OPT:IEEE_NaN_inf=ON -g X11 support:

Good Day: Has anyone successfully compiled R, especially R.1.1.1, for Irix 6.5 or lower (an SGI octane machine) and if so, may I get a copy of it? Our computer does not have all the requisite software for compiling R -- to wit, a fortran compiler -- and there is insufficient demand here for R to warrant purchasing a compiler from SGI. I am trying to spur demand for R here by making it more

Hi, I installed R-0.63.3 version on SGI machine running IRIX 6.5. Machine details: 319 <mind.krasnow.gmu.edu:R-0.63.3> uname -a IRIX64 mind 6.5 07271714 IP27 I used gcc (egcs1.1.1) and g77 combination. I use the GNU make rather than the sgi make. I went through your help mailing list and found that I have to edit the Mathlib.h file in src/include directory to undefine certain definitions

Some weeks ago I asked for help because I got "relocation truncated to fit: R_MIPS_GPREL16 against `.srdata'" error messages when trying to compile Samba 3.5.8 including FAM support on SGI Irix 6.5.28 using gcc 3.4.6 . A hint was found on this page: <http://sourceware.org/ml/ecos-discuss/2000-04/msg00214.html>, which explains the cause of the message and suggests to try