similar to: R-1.4.0 delay()

lib.fixup My previous post mentions a problem encountered when calling ".Internal( lib.fixup..." in R1.5.0. I have since found a workaround. It's possible in R1.5.0 to set attributes of search path environments directly, like so: > env_ pos.to.env( 3) > attr( env, 'any.attr')_ 'any.value' > pos.to.env( 3) <environment: package:tcltk>

Hi, I have two .rda files that I need to include in a package. I've placed them both in a data directory after save() the are around 150Kb each. When I try to check the package I get the following warning Warning: large data file(s) saved inefficiently: size ASCII compress zagoskin.rda 137Kb FALSE none Note: significantly better compression could be obtained

Hi, I have seen the answer to this sometime before but I just can't find it again - pointers appreciated. I have a package that contains some data.frames saved as .Rda files in the data/ directory. When the package is loaded I would like to have them be available in the workspace (without the user having to explicitly load them using data(...)). If my package does not use a NAMESPACE, I can

Dear all, I just found that some of the packages are not able to load any more, after I installed R2.0.1 in my Mac, it even affects my old R1.8 installs. It gives me errors when I load packages that contains "myEnv" settings. such as: RMySQL, DBI, Rggobi, etc. But others that does not require "myENV" is all right, like tcltk that only calls the c functions. The errors

The GeneSetCollection class in the Bioconductor package GSEABase extends 'list' > library(GSEABase) > showClass("GeneSetCollection") Slots: Name: .Data Class: list Extends: Class "list", from data part Class "vector", by class "list", distance 2 Class "AssayData", by class "list", distance 2 If I create

I have been using delay() quite successfully to 'load on reference' some large data files (earthquake catalogues). One minor difficulty I have not been able to overcome is that upon first reference, the data set is loaded into memory as expected, but also remains as a permanent object in the user's environment, instead of appearing to be only in the library from which it was loaded.

If save() fails because an object is not found, it should not overwrite an existing file. > a <- 1:9 > save(a, file = "a.rda") > rm(a) > load("a.rda") > a [1] 1 2 3 4 5 6 7 8 9 > rm(a) > save(a, file = "a.rda") Error in save(a, file = "a.rda") : object 'a' not found > load("a.rda") Error in

Hi, R-1.4.0 on ES40 under OSF 5.1. I use gcc version 3.0.3 During gnu make I have the message : dumping R code in package `methods' Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library"/usr/local/R1.4.0/library/methods/libs/methods.so": dlopen: /usr/local/R-1.4.0/library/ctest/libs/ctest.so: symbol "dansari" unresolved Execution

I'm encountering excruciatingly slow load times for character vectors in R 2.6.0-- up to 30sec for a 15K file that contains a no-attributes character vector of length ~1e4 and object size ~0.5MB. In R 2.5.1, repeated loads of the same set of files are near-instantaneous. The problem is proving tricky to reproduce consistently from scratch, so I have attached the 3 files used in the examples

Dear all, My apologies for re-posting this question, but I have not found any solution to my problem so far. I also think that my post may have been overseen due to the posting time and high traffic on this list. I experience a problem in implementing a S4 class in a package and would appreciate your help in this matter. The class is implemented using Rcpp, which works well. I then extend

Hi All, I've been working on updating the 'genetics' package. As a consequence of the upgrade, .First.lib() looks like: .First.lib <- function(libname, pkgname) { if (!require(combinat)) warning("Unable to load 'combinat' library. Function `diseq.ci' will fail.") require(gregmisc) genotype <-

Dear R users, I have just upgraded R v1.5.0 to v1.6.1 for Windows but have trouble loading my library of R only functions (no C calls). After examining the "library" script this difference was found: (v1.5.0) which.lib.loc <- dirname(pkgpath) descfile <- system.file("DESCRIPTION", package = package, lib.loc = which.lib.loc) if

I'm pretty sure I'll feel like [more of] an idiot but... Using Rgui working in a fresh, blank directory. > require(MASS) Loading required package: MASS [1] TRUE > data(cabbages) Warning message: ======> Data set `cabbages' not found in: data(cabbages) <===== > ls() [1] "last.warning" > search() [1] ".GlobalEnv" "package:MASS"

Hi, I have a problem with a package I have developed in that functions do not get loaded due to older versions of the functions being in the .GlobalEnv? fetched from .Rdata files stored from previous saved workspaces. I need to be able to fix this somehow when I load the package. I do not want to mess up the search order to fix the problem. How I got myself into this mess is that I started

Martin, thanks for the good news and sorry for wasting your (and others time) by not doing my homework and query bugzilla first (lesson learned! ). I have tested the new implementation from R-devel and observe a semantic difference when playing with the parameters: # Test script 1 g <- "global" f <- function(p) { l <- "local" dump.frames() }

Dear List I have experienced that objects generated with one of my packages used a lot of space when saved on disc (object.size did not show this!). some debugging revealed that formula and call objects carried the full environment of subroutines along, including even stuff not needed by the formula or call. here is a sketch of the problem ,---- | test <- function(x){ | x <-

I tried to build the gold plugin and receive the errors posted below. I checked out the gold plugin using "cvs -z 9 -d :pserver:anoncvs at sourceware.org:/cvs/src co src," as documented on llvm.org. Is that version bleeding edge and perhaps not stable? The first errors have to do with the libtool version. I have libtool 2.2.6 on my system, which is what the README-maintainer-mode

Dear R friends, to allow post-mortem debugging In my Rscript based batch jobs I use tryCatch( <R expression>, error = function(e) { dump.frames(to.file = TRUE) }) to write the called frames into a dump file. This is similar to the method recommended in the "Writing R extensions" manual in section 4.2 Debugging R code (page 96):

Hi, is there away to assure that a package is detached when R quits? I know about .Last(), but that requires the user to setup that function. What I am looking for is a way for the package to do this itself, without asking the user to edit "their" .Last(). From ?setHook I know that: "...when an R is finished, packages are not detached and namespaces are not unloaded, so

There is some interest lately in making a self-contained grub2 boot image - call it pvgrub2, used for booting paravirtual domU in xen where a grub2 config is installed. First attempt------------------ I first tried using the grub2*.src.rpm from the C7 vault. I configured as shown belowhttps://blog.xenproject.org/2015/01/07/using-grub-2-as-a-bootloader-for-xen-pv-guests/ for headers, I used