similar to: lme or nlme

Dear All, I wish to model random effects that have known between-group covariance structure using the lme() function from library nlme. However, I have yet to get even a simple example to work. No doubt this is because I am confusing my syntax, but I would appreciate any guidance as to how. I have studied Pinheiro & Bates carefully (though it's always possible I've missed

Dear all, I am estimating a mixed-model in Ubuntu Raring (13.04¸ amd64), with the code: fm0 <- lme(rt ~ run + group * stim * cond, random=list( subj=pdSymm(~ 1 + run), subj=pdSymm(~ 0 + stim)), data=mydat1) When I check the approximate variance-covariance matrix, I get: > fm0$apVar [1] "Non-positive definite

Hi I have found some postings referring to the fact that one can try and understand why a particular model is failing to solve/converge from the verbose output one can generate when fitting a nonlinear mixed model. I am trying to understand this output and have not been able to find out much: **Iteration 1 LME step: Loglik: -237.4517 , nlm iterations: 22 reStruct parameters: subjectno1

Hello, I am trying to design new variance structures by using fixed effects variables in combination with the VarPower function. That is, I would like to create and evaluate my own variance function in the data frame and then incorporate it into the model using varPower, with value=.5. As a start, I am trying to recreate the function of VarConstPower by introducing two new variables in the

I'm getting an error from nlme that has me stymied. I have a data set ,'mydata', with variables: AChE, Dose, sex, set, and mrid; 'set' and 'mrid' indicate two levels of nesting, with 'set' nested within 'mrid'. I want to fit the model: mod <- nlme(AChE ~ Cexp(Dose, A, B, m), data=mydata, fixed = A+B+M~sex, random=A+B+m~sex | mrid/set,

Hi, I have a problem in accessing samba server from NT network neighbourhood. I can see the samba server icon on neighbourhood. But while trying to access then it's asking for user name & passowrd. I am not using local user & password from unix box rather it should be authenticated from NT PDC and accordingly I have modified the smb.conf file. Here is the sample of that. 103 flara %

share - xcopy /d /e c:\somedir w:\somedir xcopy /d /e w:\somedir c:\somedir This should have the behavior of making the two directory structures identical, with newer files on one overwriting older or missing files on the other. This only behaves as expected for about half the files. For some files, Windows always wants to re-copy files to the Samba share. I have looked at the files it wants to

I'd be interested in helping too. I'm pretty new, but I think that JNI would be the easiest way to go. of course, never having done anything with JNI, what do I know :) Dave -----Original Message----- From: Josh Coalson [mailto:xflac@yahoo.com] Sent: Wednesday, November 28, 2001 5:19 PM To: Cain Brian-BCAIN1; dev Cc: Cracauer, David D. Subject: RE: [Flac-dev] Java? Decoding FLAC is

I'm trying to use samba to serve a number of home directories to other samba Linux clients on my network. ie. I have a set of client machines that want to use the /home directory that my samba server will provide I thought I could set up a share that goes something like this [homedirs] path = /home writable = true On a client machine, I smbmount //myserver/homedirs

Hello! A good day to you all. we've recently had some problems with samba (2.2.0) and sourcesafe. We had one particular project with over 700 files on it, and we've just recently encountered some problems with it, i.e. "corrupted" files from sourcesafe. i've read the archives, and someone mentioned that the number is actually unlimited(or 6.4million at the very least)...so

Hi out there, I am trying to fit a species accumulation curve (increase in number of species known vs. sampling effort) for multiple regions and several bootstrap samples. The bootstrap samples represent different arrangements of the actual sample sequence. I fitted a series of nlme-models and everything seems OK, but since the observations are correlated I tried to include some correlation

Hello all, Here is my situation: I have an existing linux box with 100+ users. This box run various services. Users do not have shell access. I have added samba to this box so users can share files and access their files from Windows. Samba installation and configuration went smoothly. Now, the problem is, I need to create entries in smbpasswd for these 100+ users. How would I go about creating

Hi, I've got a problem that sounds a lot like this, http://r.789695.n4.nabble.com/Re-R-R-2-12-0-hangs-while-loading-RGtk2-on-FreeBSD-td3005929.html under windoze 7. but it seems to hang with this stack trace, #0? 0x77830190 in ntdll!LdrFindResource_U () ?? from /cygdrive/c/Windows/system32/ntdll.dll building goes as follows, $ ./R CMD INSTALL --no-test-load nlme_3.1-97.tar.gz *

Hi all, I'm trying to build from source on Linux and getting the following error when it tries to build the help for 'nlme': <snip> ranef.lme text html latex example reStruct text html latex example /home/sfalcon/sw/R-related/R-1.8.1/bin/INSTALL: line 1: 8133 Segmentation fault ${R_CMD} perl

How does one implement a likelihood-ratio test, to test whether the variances of the random effects differ between two groups of subjects? Suppose your data consist of repeated measures on subjects belonging to two groups, say boys and girls, and you are fitting a linear mixed-effects model for the response as a function of time. The within-subject errors (residuals) have the same variance in

Hi, When installing "nlme" from CRAN on Solaris 5.3.1 by doing install.packages("nlme") I get: [clip] gcc -G -o nlme.so corStruct.o gnls.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o -L/usr/local/lib R data inst /usr/local/lib/R/bin/INSTALL: /bin/perl: not found help /usr/local/lib/R/bin/INSTALL: /usr/local/lib/R/bin/build-help: not found

I would like to be able to use lme to fit random effect models In which some but not all of the random effects are constrained to be independent. It seems as thought the pdMat options in lme are a promising avenue. However, none of the existing pdMat classes seem to allow what I want. As a specific example, I would like to fit a random intercept/slope mixed model to longitudinal observations in

diff -u --recursive icecast/src/admin.c icecast-new/src/admin.c --- icecast/src/admin.c 2003-07-18 16:29:23.000000000 -0400 +++ icecast-new/src/admin.c 2003-08-06 19:18:32.000000000 -0400 @@ -213,7 +213,7 @@ html_write(client, "HTTP/1.0 200 OK\r\n" "Content-Type: text/html\r\n" "\r\n"); - DEBUG1("Sending XSLT

On Tue, 17 Sep 2019 at 01:18, Thierry Reding <thierry.reding at gmail.com> wrote: > > From: Thierry Reding <treding at nvidia.com> > > The engine field in the FIFO fault information registers is actually 9 > bits wide. Looks like this is true for fault buffer parsing too. > > Signed-off-by: Thierry Reding <treding at nvidia.com> > --- >

Alguien tiene experiencia en escribir una pdMat. Para aquellos que no lo recuerden son las matrices de covarianzas de los efectos aleatorios que ajusta la función lme de la librería nlme Estas matrices tiene especial importancia en aplicaciones de genética de poblaciones y en particular en mapeo de asociación. Pinheiro y Bates dicen que el usuario puede crear sus propias pdMat y sugiere como