similar to: shared libraries on FreeBSD 4.*

Hi, I want to install "Matrix" using > install.packages("Matrix") After a while I get: checking whether we are using GNU C... yes checking whether gcc accepts -g... yes checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking

Can anyone tell me how to fix this. root at nucleus => /usr/local/R-1.3.1/bin/R INSTALL Matrix_0.3-15.tar.gz Installing source package `Matrix' ... creating cache ./config.cache checking for gcc... gcc checking whether the C compiler (gcc ) works... yes checking whether the C compiler (gcc ) is a cross-compiler... no checking whether we are using GNU C... yes checking whether gcc accepts

I was finally able to compile asterisk with cdr_odbc.so. But now for some reason I get that error: *CLI> load cdr_odbc.so Jun 22 16:38:53 WARNING[-1084309376]: loader.c:240 ast_load_resource: libiodbc.so.2: cannot open shared object file: No such file or directory Unable to load module cdr_odbc.so But the file is there... # ls -lag /usr/local/lib/libiodbc.so* lrwxrwxrwx 1 root

Hi, I'm trying to install RSPython v0.5-4 on a debian machine (woody, testing) but am having the following problem. $R CMD INSTALL -c --library=/usr/lib/R/library RSPython_0.5-4.tar.gz 2>err But then... $python >> import RS Error in .PythonInit() : Error in Python call: values Error in library("RSPython") : .First.lib failed for 'RSPython' Traceback (most recent

A question for a (experienced) user of the RPython package on linux. I'm trying to call R from python on a linux (Suse 7.3) box. After installing R CMD INSTALL -c RSPython_0.5-2.tar.gz I start python and do: >>> import sys >>> sys.path.append('/usr/local/lib/R/library/RSPython') >>> sys.path.append('/usr/local/lib/R/library/RSPython/Python')

I can compile RSPython without difficulty, been when I try to load it, I get the error messages below. Also below are some cryptic warnings I get on R boot (in case these are pertinent) and my sessionInfo(). Any help is appreciated. Thanks, Mark Warning messages: 1: In .updateMethodsInTable(fdef, where, attach) : Couldn't find methods table for "conditional", package

I am a long time user of R for financial time series analysis (xts, zoo, etc) and for my next project I am thinking of adding the Python language to the mix. The reason for adding Python is primarily its non-statistical capabilities. So my questions are what have people's experiences been with using interop between R and Python. I see there are two items, rPy and RSPython. It looks like rPy

Thanks for your help Duncan. Your last comment helped me to figure out what FreeBSD was doing differently than Linux/Solaris. This fix worked on a machine with Python 2.1, R 1.3.1 and FreeBSD 4.1. Here are the details: The pthreads fix: I added '-lc_r' to the PKG_LIBS definition in src/Makevars.in. The FreeBSD 'man pthread' page suggests that adding -pthread to the gcc statement

Hi all, I try to utilize RSPython to invoke Python from R. For me it works pretty fine for basic applications, but I have 3 problems that may be related. (1) I can't load other packages but "standard" ones also when I adjust the PythonPath: > importPythonModule('sys', all=T) NULL > importPythonModule('numpy', all=T) Error in

Does anyone know if Is there a way to manually install RSPython? I get this error when I try to run the script from my DOS prompt. V:\>R CMD INSTALL -c C:/Users/gene.leynes/Downloads/RSPython_0.7-1.tar.gz * installing to library 'C:/Users/gene.leynes/Documents/R/win-library/2.13' * installing *source* package 'RSPython' ... **********************************************

If I configure in R-patched and R-devel, with the same options to configure, then R-patched says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm_ in -lf77blas... yes which R-devel says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm in -lf77blas... no This is on the same computer and

Hello, My platform is SuSE 8.1. After downloading and unpacking R version 1.7 I tried building with shared libs enabled. (./configure --enabl-R-shlib). My goal is to use RSPython but I am now in my own private segmentation fault hell. The R build worked fine: make, make check, make install cool. The RSPython build worked fine. Thinking I'm good to go, I run python. But when I import RS

Hi all, I have a C function, say Cfun, that calls Lapack's DGEMM routine and I need to create a shared library to use Cfun inside R. The C file is the following #include<stdio.h> #include<R.h> #include<R_ext/Lapack.h> void Cfun(double *res, double *X, int *n, int *q) { char *ptr_TRANSA, TRANSA='T', *ptr_TRANSB, TRANSB='N'; ptr_TRANSA=&TRANSA;

>> Can some kind soul please give me a fool proof recipe for building R >> and RSPython so that it actually works? > I don't have a recipe, but one thought to help debug the process: Try > installing RPy [1]. RPy also provides access to R via Python and uses > the libR.so library. If you can install and "import rpy" without > problem then it must be

Hi, where is the latest version of the RSPython library? Is it compatible with the current stable release of R? Thanks, Darren

To get RSPython installed on my debian test box, I had to make a couple of changes not listed in ftp://www.omegahat.org/pub/Omega/RSPython/FAQ.html 1) I had to change $R_HOME/src/modules/X11 : $(R_X11_la): $(R_X11_la_OBJECTS) $(R_X11_la_DEPENDENCIES) $(SHLIB_LINK) -o $@ $(R_X11_la_LDFLAGS) $(R_X11_la_OBJECTS) $(R_X11_la_LIBADD) $(LIBS) to $(R_X11_la): $(R_X11_la_OBJECTS)

Hi all, I need the power of R from within some of my Python programs... I use debian linux (woody) at home and windows XP at work (the latter is where I need to get things done!) This are my packages: R 1.8.0 Python 2.3 RSPython 0.5-3 This is what I've done: (1) Since the Windows Binary of RSPython is compiled against Python 2.2 I downloaded the tarball (2) Followed the instructions in

I am trying to install Rpy to test it out as an R interface for a project that I am working on. However, I get the following error. Any clues as to what might be going on? I have alo tried RSPython, but I gave up due to errors. RSPython segfaults when started from R and gives an error message I can;t remember from python. Thanks, Brett >>> import rpy Traceback (most recent call

Graham, nice package this :-)-O. It was easy to set up MySQL but I struggled immensely to get the stock ODBC working with PostgreSQL (8.3), which has been discussed on the mailing list before (Prof Brian): Warning messages: 1: In odbcDriverConnect(st, ...) : [RODBC] ERROR: Could not SQLDriverConnect 2: In odbcDriverConnect(st, ...) : ODBC connection failed aka (DBD::ODBC in Perl) Missing

Dear List, I'd like to call pyhton function from within R. I tried installing the latest version of RSPython: wget http://www.omegahat.org/RSPython/RSPython_0.7-1.tar.gz R CMD INSTALL --clean RSPython_0.7-1.tar.gz I get a compile error (posted below). Did anyone else run against this ? Is there a solution ? checking for python... /usr/bin/python Python version 2.6 Using threads checking