similar to: Matrix problem w/R-1.3.1 on Solaris7

Hi, I want to install "Matrix" using > install.packages("Matrix") After a while I get: checking whether we are using GNU C... yes checking whether gcc accepts -g... yes checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking

You will need both the Basic Linear Algebra Subroutines (BLAS) and a version of Lapack to install the Matrix package. I'm not sure if pre-compiled versions are available for Solaris 7. I believe that is a rather old version of the Sun OS. After R-1.7.0 is released in April, 2003 it should be possible to use the Matrix package on any platform with R as Brian Ripley has incorporated Lapack

I've used R for a couple of years on FreeBSD with few problems. Recently, a couple of the contributed packages seem to have difficulty finding symbols in the shared libraries. Currently, I'm running R 1.3.1 on FreeBSD 4.4. I've tried setting LD_LIBRARY_PATH to /usr/local/lib and some other things. The packages I've had trouble with are: Matrix 0.3.15 RODBC 0.8.3 RSPython 0.3

I'm having trouble making todays development snapshot: -DHAVE_CONFIG_H -g -O2 -c stirlerr.c -o stirlerr.o stirlerr.c:34: conflicting types for `Rf_stirlerr' ../../src/include/R_ext/Mathlib.h:557: previous declaration of `Rf_stirlerr' make[3]: *** [stirlerr.o] Error 1 [20] /home/mfa5/gilp/R-versions/R-devel : uname -a SunOS mfa99579 5.6 Generic_105181-11 sun4u sparc SUNW,Ultra-5_10

Hello all, I am 2 days old in compiling and installing R-1.3.1 and having all kinds of problems with one particular package named "Matrix_0.3-15.tar.gz" Where should I start? OK! I have successfully installed R version R-1.3.1 as well as a host of other packages (piece of cake). When I tried to install the Matrix package, I got an error message stating that the "BLAS library

(Again: please send these things to R-devel or R-help !!) >>>>> "Yoko" == Yoko Wong <yoko@math.ubc.ca> writes: Yoko> Dear Martin, Yoko> I run into following errors when I try to compile R-0.63.1 on Yoko> Solaris7. >From all I see in the following, this looks like a Solaris 7 bug. I don't have access to this OS. Anyone else ?

Hack: diff -c defines.h.orig defines.h *** defines.h.orig Thu Jan 20 18:07:40 2000 --- defines.h Thu Jan 20 18:08:05 2000 *************** *** 78,83 **** --- 78,84 ---- /* If sys/types.h does not supply u_intXX_t, supply them ourselves */ #ifndef HAVE_U_INTXX_T # ifdef HAVE_UINTXX_T + typedef uint8_t u_int8_t; typedef uint16_t u_int16_t; typedef uint32_t u_int32_t; typedef

Hi, I'm not subscribed to that list, so please keep me in cc, if you decide to answer my question I'm trying to compile and install openssh for some solaris7-machines. Everything works fine, but I'm continuously failing to connect openssh's sshd with scp: I've tried openssh-2.5.1p1: the daemon died with signal 11 (SIG_SEGV) - sure I've read the hint on that list

Hi, I'm trying to follow the R-admin instructions for using MKL10 as the external BLAS compiling R-2.6.2 under Linux on a RH EL head node of a cluster. The configure process seems to have problems when it checks for dgemm in the BLAS. I'm using configure as: ./configure CC=icc F77=ifort --with-lapack="$MKL" --with-blas="$MKL" where $MKL is defined as in R-admin

I cannot make openssh on Solaris. The 'make' fails on the first file. Here are the commands and the output. Essentially, I pre-built EGD, SSL, and ran: configure make make errors are listed at the bottom. Can anyone help me get this compiled on Solaris7? Steve sdn at sprintlabs.com ./configure --prefix=/common --sysconfdir=/etc/ssh --with-egd-pool=/common/bin/egd.pl loading cache

Hello. I am a Linux neophyte and know almost nothing ?about compiling, so I would appreciate any help and advice y'all would care to offer. I am trying to compile the 64 bit version of R using a tuned ATLAS and LAPACK (ATLAS 3.9.24). I am running Ubunto 10.04 LTS (through wubi, FWIW). The ATLAS and LAPACK files (atlas.so, f77blas.so, lapack.so, and cblas.so) are sitting in the folder

So, tried again from scratch. Again, CentOS 5.3, which is essentially RHEL 5.3. ./configure --with-blas="-L/opt/acml4.3.0/gfortran64/lib -lacml" In config.log, get things like configure:37199: checking for dgemm_ in -L/opt/acml4.3.0/gfortran64/lib -lacml configure:37230: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c

Dear R-help, Has anyone tried linking R against the Intel Math Kernel Library on (obviously) Intel architecture? Since MKL claimed to provide optimized BLAS and Lapack, I thought it might be possible to compile R against it w/o too much trouble. My first naive try under Linux (Mandrake 7.1), using R-patched dated Jan. 4, 2002: ./configure --with-blas=/usr/local/intel/mkl/LIB/libmkli32_p3.a

If I configure in R-patched and R-devel, with the same options to configure, then R-patched says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm_ in -lf77blas... yes which R-devel says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm in -lf77blas... no This is on the same computer and

I am having trouble of compiling R 3.0.2 with MKL 11.1.0.080; tried the following resources: http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor http://cran.r-project.org/doc/manuals/R-admin.html#MKL http://software.intel.com/en-us/comment/reply/328415 and getting the following: *checking for dgemm_ in -Wl,--start-group -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -Wl,--end-group

food now? or after work in the library? On Wed, 2010-06-02 at 12:00 +0200, r-sig-debian-request at r-project.org wrote: > Send R-SIG-Debian mailing list submissions to > r-sig-debian at r-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://stat.ethz.ch/mailman/listinfo/r-sig-debian > or, via email, send a message with subject or body

Hello. I know almost nothing about Linux, so I apologize if the answer to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I

Hello. I know almost nothing about Linux, so I apologize if the answer to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I

I am trying to get R to use the ACML BLAS, specifically the 'mp' version for multithreading. I have installed acml-4-4-0-gfortran-64bit I added /opt/acml4.4.0/gfortran64_mp/lib to $LD_LIBRARY_PATH. I ran: sudo ./configure --with-blas="-L/opt/acml4.4.0/gfortran64_mp/lib -lacml_mp" At the end of the configuration, the only external library listed is readline, and at the end

Normally, I do the following to configure R for compilation on my Opteron box with ACML installed: ./configure --with-tcltk --with-blas="-L/opt/acml4.3.0/gfortran64/lib -lacml" However, when I do so, and look at Makeconf, I see BLAS_LIBS = -lblas I thought I would see BLAS_LIBS = -L/opt/acml4.3.0/gfortran64/lib -lacml Why isn't Makeconf picking up the right BLAS_LIBS (or is