similar to: code/documentation mismatches

SunOS fluke 5.8 Generic_108528-07 sun4u sparc SUNW,Ultra-Enterprise R-1.4.0 Running from the command line R CMD check chlib results in the log file 00check.log: * using log directory `/home/woodstock/hoffmann/R/Sources/chlib.Rcheck' * checking for file `chlib/DESCRIPTION' ... OK * checking package directory ... OK * checking for sufficient/correct file permissions ... WARNING *

Dear all, In R<=1.6.2 I usually used the following code (in DOS prompt) to run R in batch mode C:\documents> Rcmd BATCH myfile.R and I could see the results (including warning messages) in the file myfile.Rout In R.1.7.0 I'm experiencing the followings: (1) even if I type "Rcmd BATCH myfile.R myfile.Rout", no file myfile.Rout is created, but just a "&1" file

SunOS fluke 5.8 Generic_108528-07 sun4u sparc SUNW,Ultra-Enterprise R-1.4.0 Running from the command line R CMD check chlib results in the log file 00check.log: * using log directory `/home/woodstock/hoffmann/R/Sources/chlib.Rcheck' * checking for file `chlib/DESCRIPTION' ... OK * checking package directory ... OK * checking for sufficient/correct file permissions ... WARNING *

I have a function: source_dir <- function(path, pattern = "\\.[rR]$", chdir = TRUE) ... documented with ... \usage{source_dir(path, pattern="\\.[rR]$", chdir=TRUE)} ... But I get Codoc mismatches from documentation object 'source_dir': source_dir Code: function(path, pattern = "\\.[rR]$", chdir = TRUE) Docs: function(path, pattern =

Hi, Doing 'R CMD check diveMove' is now throwing this message: Data codoc mismatches from documentation object 'sealLocs': Variables in data frame 'sealLocs' Code: id.time.class.lon.lat Docs: class id lat lon time with: R> sessionInfo() R version 2.10.1 (2009-12-14) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C

Hi Two new packages have just been uploaded to the _DEVEL_ section on CRAN: 1. package "grid" AUTHOR Paul Murrell OVERVIEW This package provides an altenative graphics system for R. FEATURES Very flexible layout facilities (viewports, units, layouts) Component-based design (graphics can be constructed incrementally and hierarchically) Basic support for interaction (graphics

Hi Two new packages have just been uploaded to the _DEVEL_ section on CRAN: 1. package "grid" AUTHOR Paul Murrell OVERVIEW This package provides an altenative graphics system for R. FEATURES Very flexible layout facilities (viewports, units, layouts) Component-based design (graphics can be constructed incrementally and hierarchically) Basic support for interaction (graphics

Hi, I just figured out that I accidentally posted my message in HTML, so I am retrying in plain text only. Sorry. I am currently extending one of our CRAN packages and ran into an unexpected problem when checking the source package. I got some warnings in the step "* checking for code/documentation mismatches". I double checked everything and did not see anything that would

hello, I am using R1.2.2 on win98 with 64 meg of RAM I try to read a big csv file and get the error : a <- read.csv("c:/all2.csv",header=T) Error: vector memory exhausted (limit reached?) In addition: Warning message: Reached total allocation of 16Mb: see help(memory.size) Lost warning messages from there on, nothing works File-Exit, ^F4, q() , top right cross, the same message

I am running R-1.3.0 on Solaris 8: Under Solaris I do setenv dendro_us hoffmann echo $dendro_us gives back: hoffmann which is correct. When in R I do: Sys.getenv("dendro_us") I get dendro_us "" which is NOT correct: Inverse effect (taken from help of Sys.getenv) Under R: print(Sys.putenv("R_TEST"="testit", ABC=123)) [1] TRUE TRUE

Dear R developers, When building/checking my package (in R 2.6.1 under windows) I run into some messages that I do not completely understand and that do not give me precise enough leads to pinpoint where the error in my package is. I would be very grateful for any suggestions. Did anyone else encounter the same problem before? When building or installing the package, I get the message (no error

Dear R-helpers, When installing a source package I can suppress the compilation of .chm files by using the --docs="normal" option. Is it also possible to suppress the creation and checking of .chm files when calling R CMD check ? best, ingmar

Hello R-users: I'm experiencing difficulty in building a package in R 1.4.1 under Windows 2000. When I run Rcmd I get this: F:\r\library>f:\r\bin\rcmd check ringsim Please set TMPDIR to a valid temporary directory F:\r\library>f:\r\bin\rcmd build ringsim Please set TMPDIR to a valid temporary directory This problem was discussed over a year ago - the problem was attributed to a Perl

Hi, When installing "nlme" from CRAN on Solaris 5.3.1 by doing install.packages("nlme") I get: [clip] gcc -G -o nlme.so corStruct.o gnls.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o -L/usr/local/lib R data inst /usr/local/lib/R/bin/INSTALL: /bin/perl: not found help /usr/local/lib/R/bin/INSTALL: /usr/local/lib/R/bin/build-help: not found

I am troubled by what appears to be a glitch in the current distribution, or in its installation on our system. I've traced it, and found a work- around. Is this normal? Is there a cleaner solution? The problem: During a package installation, the warning message "WARNING: ignoring environment value of R_HOME" from line 31 of <R_HOME>/bin/R is accidentally spliced into the

On Thu, 18 Nov 2004 00:38:47 +0000 (UTC), Gabor Grothendieck <ggrothendieck@myway.com> wrote : >DIFFERENCE BETWEEN USING .RBUILDIGNORE AND NOT > >The reason that the processing is different according to whether one >uses .Rbuildignore or not is that > R CMD build >takes the .Rbuildignore file into account but > R CMD install > R CMD check > R CMD build

Hi the list, I build a package. They was a mistake in it, but R CMD check did not find it. Is that normal ? Here is what Kurt gets (which is right, I did this mistake): --- 8< ---------------- * checking for code/documentation mismatches ... WARNING S4 class codoc mismatches from documentation object 'LongData-class': Slots for class 'LongData' Code: id other time traj

Dear R Help, My apologies if this is widely known, but I didn't find this in the R archives. I am running WinXP pro and R 1.90. Rcmd build or check fails with the error: "Please set TMPDIR to a valid temporary directory" $TMPDIR is set to $TMPDIR or C:/TEMP in share\perl\R\Var.pm. TMPDIR or c:\temp do not exist on WinXP on my laptop. I have C:\WUTemp and the env variables

Hi, since nobody answered to my first message, I try to explain my problem more clearly and more general this time: I have a data set in my R package "micEcon", which has many variables (82). Therefore, I would like to avoid to describe all variables in the "\format" section of the documentation (.Rd file). However, doing this lets "R CMD check" complain about

For the package at http://www.cs.cas.cz/~savicky/R-devel/something_0.0.0.tar.gz which is a minor part of some other package only to demonstrate the problem, i get (under R version 2.11.0 Under development 2009-12-12 r50714 and also under R-2.9.2, openSUSE 11.1 (x86_64) and CentOS release 5.2) R CMD check something_0.0.0.tar.gz ... * checking Rd files ... OK * checking Rd metadata ...