similar to: using jpeg() in BATCH mode

Hello, I am running some commands in batch on a server that I SSH into; some of the commands call jpeg(). If I continue to stay signed on (with my xwindows working on my machine) then the jpeg() command works (with a single caveat, below). If I leave it and sign off (with a nohup command in front of my BATCH) then jpeg gives me an error like this: Error in X11(paste("jpeg::",

Hi Community, here is the problem, Linux problem (reported to work on Windows). I need to generate graphical output in any of bitmap format under the 'R CMD BATCH'. Whereas the script generating png-s works perfectly in the R session, such things as X11, png and jpeg are not usable in BATCH (they cannot be switched on by --gui-X11 etc) and X11 is prompted to be required for png. At

Hi Community, here is the problem, Linux problem (reported to work on Windows). I need to generate graphical output in any of bitmap format under the 'R CMD BATCH'. Whereas the script generating png-s works perfectly in the R session, such things as X11, png and jpeg are not usable in BATCH (they cannot be switched on by --gui-X11 etc) and X11 is prompted to be required for png. At

Hello all: After I compile the R-1.7 with the follows in Linux7.3: configure --with-x --with-jpeglib --with-libpng --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib and make and make install. The R is able to generate PNG/JPEG files from the command line. However, when I put the same commands in a batch file and run: R --gui BATCH R.Batch.file It gave me a error in the

Hi R, Does 'savePlot' will not work in the batch mode? I get the below error: > x=c(1,2,3,4,5,6,7) > hist(x) > savePlot("D:\\Test\\histo",type="jpeg") Error in savePlot("D:\\Test\\histo", type = "jpeg") : can only copy from 'windows' devices Execution halted The same works in the interactive mode. What

Hi a short question is there a way to generate jpeg's etc. in BATCH mode ? The following example does not work in BATCH: I have a file called Rgraph.in: *rsy at puffin*[15:11][~][57]> cat Rgraph.in jpeg("/tmp/my.jpg") hist(runif(10000)) dev.off() *rsy at puffin*[15:11][~][58]> *rsy at puffin*[15:09][~][55]> R BATCH Rgraph.in OUT 4.120u 0.160s 0:05.17 82.7% 0+0k

Hi everyone, I'm interested in running R remotely from a Perl program--specifically I want to plot some data in Perl and return the graph as an object to Perl. Does anyone know if this is possible? Thanks, Evan -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",

Hi all, I'm trying to invoke R from a perl program, using R BATCH. My original R program wrote an output to a file and plotted a graph. I'm having problems with the following three things: 1) To get the output file name form the perl program I wrote the following, in my R program: commandArguments <- commandArgs(); outputFile <- commandArguments[length(commandArguments)]; This

Hi everyone, anybody’s got an idea why the following script doesn’t produce batch-histograms? I’m using Windows XP and R 2.5.1. Here’s the script: matrix<-read.csv("C:\\Stadtwerke_mit_Umlage.csv", header=TRUE,sep=";",dec=".") Stadtwerke<-colnames(matrix) Bereich_blau<-66.67 Schleifen<-dim(matrix)[2]

Hi all, What is the right portable way to save graphics in batch mode? Remarks: 1. Problem is STFWed and RTFMed. In particular a short note about png() is found in R-FAQ. In fact, there were stated that png() is not reliable under Linux in batch mode. 2. savePlot under windows is quite convenient, but not supplied under Linux. 3. pdf() + postscript() < savePlot()

Hi! The R-intro guide states that: "The graphics facilities can be used in both interactive and batch modes,.." but I'm trying both R BATCH commands.file and R --no-save < commands.file and, although I get no errors and the output file with the results is written to disk, I get no graphics. (I want the R function to leave results in a file that a shell script reads and use,

Hi, I am using R 1.9.0 (2004-04-12) for Mac OS X. I am having trouble printing to a jpg file. This only happens when I use R in batch (with the BATCH option) mode. If I launch the R GUI or the command line version and run the script from either, I have no problems. Only when running in BATCH mode I get a file with the same name as my script where I find the following message at the end:

Hi everyone, I'm translating into R some programs I worked through in Matlab to calculate the angle between two vectors (very large--like 6200 rows in each vector). In Matlab, I used a series of nested for loops, because I was calculating the angles between many pairs of vectors. I know for loops are not desirable in R code, so I was wondering if anyone could recommend a faster way to

Hello. I am getting started with R system and I have a question: I'd like to use R system to generate some graphics (jpeg) files dynamically from command line or perl script (like: > Rgui -input_r_file <file>.r -output_jpeg_file <file>.jpeg) 1) How should I invoke R to read the data from external file. 2) How should I invoke R to run statements from external *.r file. 3) How

I realize batch mode is still experimental, but I was hoping there might be a workaround for a problem I am getting. I have been trying to run some tests and I get the below error when I use the --read-batch option to. I can successfully create an initial set of batch files, then a second set based upon a few modified test files from the first batch. When I first run the --read-batch option

Anyone, When attempting to use batch mode to update a second host by executing the .sh file I get: [root@sspfedweb batch]# ./obsession_0000.sh Batch file ./batch/obsession_0000.rsync_flist open error: No such file or directory rsync error: syntax or usage error (code 1) at batch.c(241) Can anyone tell me whatI'm doing wrong. I tar and gzip the batch directory and ftp to the target

Hello to everybody! I want to run R in batch mode but it doen't work (Error: syntax error) I've found this in R help: R CMD BATCH [options] infile [outfile] I have tried differents commands: (I have been working in the same directory I have "test.txt" file and "test2.txt" would be the output file) > R CMD BATCH "test.txt" or > R CMD BATCH

Chris, to put things in the right prespective, you should read (if you haven't done so already) the original paper describing the design behind batch mode. The design and implementation of this functionality goes back to a project called the Internet2 Distributed Storage Infrastructure (I2-DSI). As part of that project, the authors created a modified version of rsync (called rsync+)

Whats the reason that using a batch file can't be used with a remote destination? rsync --read-batch=foo /mysrc remote:/dest gives remote destination is not allowed with --read-batch I need to push the same set of files to about 20 servers and because of firewall rules, the 20 servers cannot pull from the central one. Thanks Kimo

And on that note, here is a function that I use to get around it: -----Original Message----- From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch] On Behalf Of Jeffrey Horner Sent: Friday, November 03, 2006 10:01 AM To: ryszard.czerminski at novartis.com Cc: r-help at stat.math.ethz.ch Subject: Re: [R] R CMD BATCH: unable to start device PNG ryszard.czerminski