similar to: SOM code

Has anyone had success building a package on a windows machine? I am trying the following command with no luck (perhaps my flags are incorrect?). At this point I am stuck. Any help greatly appreciated. Niels Waller (BTW - I have no idea why it cannot find sh.exe since I have it is a directory that is specified in a path statement) H:\R\bin>rcmd build --binary --use-zip h:\taxon2 * checking

I have written an R function that writes output to an external file using the sink function. I assume that `sink' is not operating system dependent. At the end of the function I have additional code that opens the newly created file using notepad on a Windows system. Obviously, this part of the code will not work on a Mac or Linux box. Since I do not have a machine with Linux or the Mac OS

Is it possible to create a cloud plot (in library lattice) that is not enclosed by a border? I want the 3d plot to include the cube - I just do not want the border on the page (because I would like to place four clouds on a page). Setting the argument: border=FALSE clearly is not the answer (it doesn't appear to do anything on my system). I am using R 1.5.1 on a windows NT machine.

R colleagues, I am stumped. I would like the inter-tick distances to be the same on the x and y axes but cannot determine how to do so when the lower half of the y axis is not printed. Thanks for any and all suggestions. (btw, setting par(pty="s") does not solve my problem) Niels Waller M<-matrix(c(2,1, -1,3),2,2,byrow=TRUE)

I've rolled up R-0.99.0.tgz a moment ago. You can get it from ftp://cvs.r-project.org/pub/CRAN/src/base/R-0.99.0.tgz or http://cvs.r-project.org/pub/CRAN/src/base/R-0.99.0.tgz or wait for it to be mirrored at a CRAN site near you within a day or two. There's also a version split in three (!) for floppies if you prefer that. The next release is to be 1.0.0 at the end of this month,

I've rolled up R-0.99.0.tgz a moment ago. You can get it from ftp://cvs.r-project.org/pub/CRAN/src/base/R-0.99.0.tgz or http://cvs.r-project.org/pub/CRAN/src/base/R-0.99.0.tgz or wait for it to be mirrored at a CRAN site near you within a day or two. There's also a version split in three (!) for floppies if you prefer that. The next release is to be 1.0.0 at the end of this month,

Is there an implementation of the SOM ('Self Organizing Map') procedure in R ? I am aware of the implementations of Sammon mapping, multidimensional scaling and, somewhat peripherally, principal curves and projection pursuit .. but not SOM per se as far as I can see. Am I missing something? --------------------- for anyone interesed in SOM I found Samuel Kaski's thesis

What should I do in order to be able to compile OpenSSH 3.1p1 with OpenSSL 0.9.5a? I get a lot of EVP related compile errors in cipher.c, appended. Thanks. Samuli cipher.c: In function `cipher_init': cipher.c:200: void value not ignored as it ought to be cipher.c:206: warning: implicit declaration of function `EVP_CIPHER_CTX_set_key_length' cipher.c:210: void value not ignored as it

Hi all, I have a large table mapping thousands of COGs(groups of genes) to pathways. # Ex COG0001 patha pathb pathc COG0002 pathd pathe COG0003 pathe pathf pathg pathh ## I would like to combine this information into a big list such as below COG2PATHWAY<- list (COG0001 = c ("patha ","pathb ","pathc

R users, I recently upgraded (?) to Windows XP from 2000. I am trying to build an R package. I have done this many times on my old system and I am not sure why it is not working in XP. To build the package I call a bat file that specifies all the necessary paths -- but the "build" file (which appears to be a perl script) is looking for a "src" subdirectory in the src

R community, I am having trouble adding Greek symbols to a plot. I want to mix Roman text and Greek -- but they keep fighting! Pseudo code for what I want: [Greek] gamma [subscript]1 = [Roman] Threshold 1 I have conducted a search on the CRAN FAQ list, but no luck. Any and all hints would be GREATLY appreciated. Niels Waller Department of Psychology and Human Development Vanderbilt

Dear friends, I am trying to port a collection of S-PLUS teaching functions over to R. Several of my functions use animation. Animation in S-PLUS is not ideal, but can be accomplished with a call to guiLocator (this forces the program to print to the graphsheet rather than wait until the function has completed all calculations). Does anyone know if there is a trick that will enable me to

Dear Friends, Yesterday I posed a question to the list concerning the possibility of doing animation examples in R. Here is an example S-Plus (4.5 for Windows ) that I wrote to illustrate my problem. If I try this in R (comment out the graphsheet and guilocator calls) I don't see my results until after the function has iterated through the 100 trials. I would like to plot each iteration.

Hello, I'm having some difficulty running Niels Waller's Maxcov Hitmax program in the R console, and I was hoping you could provide me with some assistance. When I attempt to run the analysis I receive the following message: Indicators 1 3 & 2Error in if (del == 0 && to == 0) return(to) : missing value where TRUE/FALSE needed I contacted Dr. Waller regarding this question

Neils Waller asks > -----Original Message----- > From: niels Waller [mailto:niels.waller at home.com] > Sent: Sunday, 17 December 2000 8:31 > To: r-help at stat.math.ethz.ch > Subject: > > Does anyone know of an R (or S-PLUS) function for delineating > all possible combinations and permutations? > > That is, for set (1,2,3) 3_C_2 = {1,2} {1,3} {2,3} >

I have been reading that there may be a patch floating around to enable krb5 auth in dovecot <1.0, namely 0.99.10.8 (openbsd port). It could be I have something misconfigured, for openbsd supports kerberos and most programs which use the operating system's auth features use kerberos transparently through login(1). If there is a patch, I would be very interested in testing it. -- John

Is R behaving correctly in this example? I do not understand why column 2 has any 2s in it (and why column 3 has any 1s) > x<-matrix(0,10,3) > x[seq(1,10,by=2),2:3]<-c(1,2) > x [,1] [,2] [,3] [1,] 0 1 2 [2,] 0 0 0 [3,] 0 2 1 [4,] 0 0 0 [5,] 0 1 2 [6,] 0 0 0 [7,] 0 2 1 [8,] 0 0 0 [9,] 0 1

Is there anyway to change the color of the text when using writeLines? I would like to write a red error message to the screen. thanks for any leads. Niels Waller -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the

Dear R community, I am running R 2.0.1 on a Windoze XP OS. I recently upgraded from R 1.9x to 2.0.1 and I am currently upgrading a my personal function packages. My other packages compiled without a hitch but I am having a difficult time with my largest package. Can someone please help me with the following error message "Error in parse(file, n, text, prompt) : syntax error on line

Hello, I am not only interested in finding out which genes are the most highly up- or down-regulated (which I have done using the linear models and Bayesian statistics in Limma), but I also want to know which genes are consistently highly transcribed (ie. they have a high intensity in the channel of interest eg. Cy5 or Cy3 across the set of experiments). I might have missed a straight forward