Displaying 20 results from an estimated 10000 matches similar to: "Specification of factors in tapply"
2001 Feb 23
0
Prevent killing an ESS *R* buffer unintentionally
A couple of days ago I posted some elisp code that asks the user for
confirmation before deleting a process buffer, e.g. the *R* buffer. However,
this code was only evaluated if a buffer was killed by means of [C-x k]. The
following code does not need to be bound to a particular key, it's
internally called by kill-buffer. (Also works if buffer is deleted in other
ways, e.g., [C-x C-c].)
2009 Dec 08
6
conditionally merging adjacent rows in a data frame
Hi, I have a data frame and want to merge adjacent rows if some condition is
met. There's an obvious solution using a loop but it is prohibitively slow
because my data frame is large. Is there an efficient canonical solution for
that?
> head(d)
rt dur tid mood roi x
55 5523 200 4 subj 9 5
56 5523 52 4 subj 7 31
57 5523 209 4 subj 4 9
58 5523 188 4 subj 4 7
2010 May 17
1
Query on linear mixed model
Hi R Forum
I am a newbie to R and I have been amazed by what
I can get my team to accomplish just by
implementing Scripting routines of R in all my
team's areas of interest..
Recently i have been trying to adopt R scripting
routine for some analysis with longitudanal data..
I am presenting my R script below that I have
tried to make to automate data analysis for
longitudanal data by employing
2012 Jan 06
1
lme model specification problem (Error in MEEM...)
Dear all,
In lme, models in which a factor is fully "contained" in another lead to
an error. This is not the case when using lm/aov.
I understand that these factors are aliased, but believe that such
models make sense when the factors are fitted sequentially. For example,
I sometimes fit a factor first as linear term (continuous variable with
discrete levels, e.g. 1,2,4,6), and
2002 Oct 08
3
repeated measures help; disagreement with SPSS
Hi, all.
I have a simple design I'm comparing to output from SPSS.
the design is 1 repeated measure (session) and 1 between measure
(cond). my dependent measure is rl. here is the data I'm using (in a
data.frame):
mig <- data.frame(subj=factor(rep(subj,3)),
cond=factor(rep(cond,3)),
session=factor(c(rep(1,nsubj),rep(2,nsubj),rep(3,nsubj))),
1999 Jan 04
1
Names of data frame columns in an apply
Hi,
[some background]
I have a dataset which describes a number of subjects doing a "scientific
discovery". That is, they have to discover the rules underlying a
particular domain. To do so, they have to set the levels of 5 variables
which leads to a certain outcome. To identify what kind of "experiments"
the subjects did, I want to combine these levels into one variable
2009 Jan 03
1
how specify lme() with multiple within-subject factors?
I have some questions about the use of lme().
Below, I constructed a minimal dataset to explain what difficulties I
experience:
# two participants
subj <- factor(c(1, 1, 1, 1, 2, 2, 2, 2))
# within-subjects factor Word Type
wtype <- factor(c("nw", "w", "nw", "w", "nw", "w", "nw", "w"))
# within-subjects factor
2007 Aug 22
4
within-subject factors in lme
I don't think, this has been answered:
> I'm trying to run a 3-way within-subject anova in lme with 3
> fixed factors (Trust, Sex, and Freq), but get stuck with handling
> the random effects. As I want to include all the possible random
> effects in the model, it would be something more or less
> equivalent to using aov
>
> > fit.aov <- aov(Beta ~
>
2007 Nov 13
1
TRUNCATED error with data frame
Hi ,
I am new to R.
I am trying to run a simple R script as shown below:
aov.R
------
data1<-c(49,47,46,47,48,47,41,46,43,47,46,45,48,46,47,45,49,44,44,45,42,45,45,40
,49,46,47,45,49,45,41,43,44,46,45,40,45,43,44,45,48,46,40,45,40,45,47,40)
matrix(data1, ncol= 4, dimnames = list(paste("subj", 1:12),
c("Shape1.Color1",
"Shape2.Color1", "Shape1.Color2",
2011 May 22
2
Convert dataframe with two factors from wide to long format
I know how to convert a simple dataframe from wide to long format with one
varying factor. However, for a dataset with two factors like the following,
Subj T1_Cond1 T1_Cond2 T2_Cond1 T2_Cond2
1 0.125869 4.108232 1.099392 5.556614
2 1.427940 2.170026 0.120748 1.176353
How to elegantly convert to a long form as
Subj Time Cond Value
1 1 1 0.125869
1
2008 May 30
2
inconsistent output when using variable substitution
I am extremely puzzled by this behavior in R. I have a data frame called
Trials in which I have results from an experiment. I am trying to do a
subjects analysis, but getting weird results. Each row has 1 trial in it,
which includes a column for the subject number I get the list of subject
numbers like so:
> Subj=unique(sort(Trials$Subj))
Then I loop over them. But I get strange results. As
2010 Sep 05
1
Warning messages: not meaningful for factors
Dear Experts,
I need to include the repeated structure in our data set object,
recall.sums.df, before using gls function.
Thus I used groupedData.
But I encountered error messages which may mean '*' is not not meaningful
factor.
Please let me know what I have to do.
Thanks,
Jeong
> recall.sums.df[0:10, ]
recall.values recall.ind subj replication hemi region group
1 17.515
2012 Apr 23
2
plot function creating bars instead of lines
Hello,
I am having a problem where code that plots lines using a different data
frame plots bars with the current data frame (I am intended to plot lines).
The code specifies lines (see below), so I can't figure out why the results
are bars. I suspect that it may have something to do with the fact that in
the data frame where the code worked as intended, the both variables
specifying
2008 Feb 05
1
Extracting level-1 variance from lmer()
All,
How does one extract the level-1 variance from a model fit via lmer()?
In the code below the level-2 variance component may be obtained via
subscripting, but what about the level-1 variance, viz., the 3.215072 term?
(actually this term squared) Didn't see anything in the archives on this.
Cheers,
David
> fm <- lmer( dv ~ time.num*drug + (1 | Patient.new), data=dat.new )
2004 Mar 19
2
for loop or Hmisc library trap.rule function syntax error
Hello:
I am new R user stumped why the R code after this paragraph generates "Error:
syntax error" messages after each of the last 2 lines. I have tried searching
the manuals, Hmisc documentation, contributed manuals, help archives, and
Internet. I am running R 1.7.1 under Windows 2000 (I will upgrade when my
imminent OS upgrade happens). My data was successfully entered and
2008 Dec 17
1
repeated measures aov with weights
Dear R-help,
I'm facing a problem with defining a repeated measures anova with
weighted data.
Here's the code to reproduce the problem:
# generate some data
seed=11
rtrep <- data.frame(rt=rnorm(100),ti=rep(1:5,20),subj=gl
(20,5,100),we=runif(100))
# model with within factor for subjects/repeated measurements, no
problem
aov(rt~ti + Error(subj/ti),data=rtrep)
#model with weights
2008 Sep 11
1
plot of all.effects object
All,
I'm trying to plot an all.effects() object, as shown in the help for
all.effects and also Crawley's R book (p.178, 2007). The data has a repeated
measures structure, but I'm using all.effects for the simple lm() fit here.
Below is a reproducible example that yields the error message.
fm.ex = lm(dv ~ time.num*drug*X, data = dat.new)
fm.effects = all.effects(fm.ex, xlevels =
2008 Sep 19
1
Type I SS and Type III SS problem
Dear all:
I m a newer on R.? I have some problem when I use?anova function.? I use anova function to get Type I SS results, but I also need to get Type III SS results.? However, in my code, there is some different between the result of Type I SS and Type III SS.? I don?t know why the ?seqe? factor disappeared in the result of Type III SS.? How can I do??
Here is my example and result.
2003 Dec 17
1
repeated measures aov problem
Hi all,
I have a strange problem and rigth now I can't figure out a
solution.
Trying to calculate an ANOVA with one between subject factor (group)
and one within (hemisphere). My dependent variable is source
localization (data). My N = 25.
My data.frame looks like this:
> ML.dist.stack
subj group hemisphere data
1 1 tin left 0.7460840
2 2 tin left
2007 May 16
1
lmer error confusion
Hi All.
I'm trying to run a simple model from Baayan, Davidson, & Bates and getting
a confusing error message. Any ideas what I'm doing wrong here?
# Here's the data.....
Subj <- factor(rep(1:3,each=6))
Item <- factor(rep(1:3,6))
SOA <- factor(rep(0:1,3,each=3))
RT <-
c(466,520,502,475,494,490,516,566,577,491,544,526,484,529,539,470,511,528)
priming