Displaying 20 results from an estimated 1100 matches similar to: "bug in step()?"
2008 Oct 11
1
step() and stepAIC()
The birth weight example from ?stepAIC in package MASS runs well as
indeed it should.
However when I change stepAIC() calls to step() calls I get warning
messages that I don't understand, although the output is similar.
Warning messages:
1: In model.response(m, "numeric") :
using type="numeric" with a factor response will be ignored
(and three more the same.)
Checked
2003 Aug 27
1
Problem in step() and stepAIC() when a name of a regressors has b (PR#3991)
Hi all,
I've experienced this problem using step() and stepAIC() when a name of a
regressors has blanks in between (R:R1.7.0, os: w2ksp4).
Please look at the following code:
"x" <-
c(14.122739306734, 14.4831100207131, 14.5556459667089,
14.5777151911177,
14.5285815352327, 14.0217803203846, 14.0732571632964,
14.7801310180502,
14.7839362960477, 14.7862217992577)
2005 Dec 08
1
mle.stepwise versus step/stepAIC
Hello,
I have a question pertaining to the stepwise regression which I am trying to
perform. I have a data set in which I have 14 predictor variables
accompanying my response variable. I am not sure what the difference is
between the function "mle.stepwise" found in the wle package and the
functions "step" or "stepAIC"? When would one use
2009 May 07
1
Step and stepAIC
Hi all,
I’m using "step" and "stepAIC" for stepwise regression. After each step, I would like to make an additional calculation based on the independent variables that have been selected until this step and their corresponding weights. Where do I have to add this calculation?
And a second question: Is it possible, to define a certain limit of factors for the regression,
2011 Apr 27
1
Problem about step and stepAIC
Hello,
I am now running a multiple linear regression program, but I do not know the
difference between the command step and stepAIC.
Thanks.
Maggie
[[alternative HTML version deleted]]
2006 May 05
1
trouble with step() and stepAIC() selecting the best model
Hello,
I have some trouble using step() and stepAIC() functions.
I'm predicting recruitment against several factors for different plant
species using a negative binomial glm.
Sometimes, summary(step(model)) or summary(stepAIC(model) does not
select the best model (lowest AIC) but just stops before.
For some species, step() works and stepAIC don't and in others, it's the
opposite.
2003 May 08
2
Forward Stepwise regression with stepAIC and step
Dear all,
I cannot seem to get the R functions step or stepAIC to perform forward
or stepwise regression as I expect. I have enclosed the example data in
a dataframe at the end of this mail. Note rubbish is and rnorm(17) variable
which I have deliberately added to the data to test the stepwise procedure.
I have used
wateruse.lm<-lm(waterusage~.,data=wateruse) # Fit full model
2003 Jul 16
1
step.lm() fails to drop {many empty 2-way factor cells} (PR#3491)
Exec. Summary:
step() basically ``fails'' whereas MASS' stepAIC() does work
This may not be a bug in the strictest sense, but at least
something for the wish list. Unfortunately I have no time
currently to investigate further myself but want to be sure this
won't be forgotten:
The example is using a real data set with 216 observations on 9
variables -- where we have
2009 Feb 21
1
variable/model selction (step/stepAIC) for biglm ?
Hello dear R mailing list members.
I have recently became curious of the possibility applying model
selection algorithms (even as simple as AIC) to regressions of large
datasets. I searched as best as I could, but couldn't find any
reference or wrapper for using step or stepAIC to packages such as
biglm.
Any ideas or directions of how to implement such a concept ?
Best,
Tal
--
2003 Jul 21
0
step.lm() fails to drop {many empty 2-way factor cells} (PR#3527)
Your example works on 2 of the 3 systems I tried (and in fact the warnings
you got on stepAIC are spurious). It's all down to rounding errors.
I've added a fuzz in the termination test.
B
On Wed, 16 Jul 2003 maechler@stat.math.ethz.ch wrote:
> Exec. Summary:
> step() basically ``fails'' whereas MASS' stepAIC() does work
>
> This may not be a bug in the
2010 Feb 12
1
validate (rms package) using step instead of fastbw
Dear All,
For logistic regression models: is it possible to use validate (rms
package) to compute bias-corrected AUC, but have variable selection
with AIC use step (or stepAIC, from MASS), instead of fastbw?
More details:
I've been using the validate function (in the rms package, by Frank
Harrell) to obtain, among other things, bootstrap bias-corrected
estimates of the AUC, when variable
2004 Mar 19
2
Odd behaviour of step (and stepAIC)?
I can only assume I'm betraying my ignorance here, but this is not what
I would expect.
I'm getting the following from a stepwise selection (with both step and
stepAIC):
> step(lm(sqrt(Grids)~ SE + Edge + NH), scope=~ (Edge + SE + NH)^2)
Start: AIC= 593.56
sqrt(Grids) ~ SE + Edge + NH
Df Sum of Sq RSS AIC
<none> 2147.0 593.6
+ Edge:NH 1
2005 Oct 25
0
One more about Error in step() (or stepAIC) for Cox model
Thank you for Prof.Ripley's suggestion. I fixed the program by adding a
lower scope, and the program ran, but I still got warning messages, and
don't know what is going on, would this affect my results?
...
Step: AIC= 12337.74
Surv(tlfup, cen) ~ MI[[j]]$trt + MI[[j]]$agem40 + MI[[j]]$agem40sq +
mhtypeed1 + mhtypeed2
Df AIC
<none> 12338
-
2008 Nov 06
0
Queries about step() and stepAIC()
I have been learning how to use these functions and would like to know
the following as
I have so far been unable to find the answers in the documentation.
1) What stopping rules are used ?
2) Can the stopping rules be changed?
3) Can the results of each step be stored as objects in R and if so how
?
4) Is there a worked example somewhere of using the keep= argument ?
Many thanks in
2003 Mar 04
1
Sample size and stepAIC, step, or AIC
Do any R functions incorporate a sample sample size correction (e.g.,
Burnham and Anderson 1998).
Thanks,
Hank Stevens
Martin Henry H. Stevens, Assistant Professor
338 Pearson Hall
Botany Department
Miami University
Oxford, OH 45056
Office: (513) 529-4206
Lab: (513) 529-4262
FAX: (513) 529-4243
http://www.cas.muohio.edu/botany/bot/henry.html
http://www.muohio.edu/ecology
2005 Oct 24
1
Error in step() (or stepAIC) for Cox model
Hello all,
I am trying to use stepwise procedure to select covariates in Cox model
and use bootstrap to repeat stepwise selection, then record how many
times variables are chosen by step() in bootstrap replications. When I
use step() (or stepAIC) to do model selection, I got errors. Here is the
part of my code
for (j in 1:mm){ #<--mm=10
for (b in 1:nrow(reg.bs)){ #<--bootstrap 10
2010 Jul 07
1
Why do <none>s appear in the list of predictor variables in logistic regression using 'step' or 'stepAIC' function?
Would anyone help me solve my problem with R, please? I am very new to R. I am doing logistic regression analysis on the presence/absence of salamanders using several predictor variables, as shown below. I have checked my data, but I didn't find any 'NA' or empty cells. When I used step() or stepAIC to select significant predictor variables, <none>s appear to places where
2005 Nov 29
1
saving AIC of intermediate models in step
Hi all,
I'm fitting GLM's using the step or stepAIC procedures and I would
like to save the AIC of the intermediate models. I would appreciate
very much information about how todo this.
Best wishes
Germ??n L??pez
2006 May 08
1
ob.step$anova interpretation
hello
I built logistic regression model.
To model check I used stepAIC. But I don't know how it
is interpreted . I could not any find any explanation about it
For instance which model is preferable ? What are the critarias
to choose beter model
I will appreciate if you give me an explanation ?
models
---------
> lo1.step$anova
Stepwise Model Path
Analysis of Deviance Table
Initial
2006 Jun 14
3
A question about stepwise procedures: step function
Dear all,
I tried to use "step" function to do model selection, but I got an error massage. What I don't understand is that data as data.frame worked well for my other programs, how come I cannot make it run this time. Could you please tell me how I can fix it?
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