similar to: Where can I download the MASS package

Dear r-devel members, I tried to build R packages on a PC running Windows XP but experience problems. However, it is ok when there is no inst directory in a package. Any help would be appreciated. The following is an example, C:\work>R CMD check VR_7.2-19.tar.gz * checking for working latex ... OK * using log directory 'C:/work/VR.Rcheck' * using R version 2.1.1, 2005-06-20 *

Hey, when did I lose MASS? Anyway, I found the VR package but she's not compiling on OS X. Any tips? Yes, I have the developer tools and Fortran. Could someone send me a compiled package?

I'm pretty sure I'll feel like [more of] an idiot but... Using Rgui working in a fresh, blank directory. > require(MASS) Loading required package: MASS [1] TRUE > data(cabbages) Warning message: ======> Data set `cabbages' not found in: data(cabbages) <===== > ls() [1] "last.warning" > search() [1] ".GlobalEnv" "package:MASS"

I agree with many the sentiments about the wisdom of computing very small p-values (although the example below may win some kind of a prize: I've seen people talking about p-values of the order of 10^(-2000), but never 10^(-(10^8)) !). That said, there are a several tricks for getting more reasonable sums of very small probabilities. The first is to scale the p-values by dividing the

I downloaded and installed dovecot 1.1 nightly build yesterday. Here is a the errors I collected from the log file. dovecot: Aug 15 14:19:29 Error: IMAP(use at doamin): Log synchronization error at seq=7,offset=24 for /data2/mail/we/webmail.us/ji/jing/dovecot.index: Extension introduction for unknown id 2 dovecot: Aug 15 14:19:29 Error: IMAP(use at doamin): Log synchronization error at

Hi, I need some neat ways of determing a subset of binary strings. For example, x=c(0,0,1), y=c(0,1,1), z=c(0,1,0). So x is a subset of y and z is also a subset of y, but x is not a subset of z. I tried to search R functions and packages but no hits. Any ideas? Best, Jing -- Jing Tang, PhD Senior Researcher Finnish Institute of Molecular Medicine (FIMM) FI-00014 University of

You may want to look into using the log option to qnorm e.g., in round figures: > log(1e-300) [1] -690.7755 > qnorm(-691, log=TRUE) [1] -37.05315 > exp(37^2/2) [1] 1.881797e+297 > exp(-37^2/2) [1] 5.314068e-298 Notice that floating point representation cuts out at 1e+/-308 or so. If you want to go outside that range, you may need explicit manipulation of the log values. qnorm()

>>>>> William Dunlap via R-devel >>>>> on Sun, 23 Jun 2019 10:34:47 -0700 writes: >>>>> William Dunlap via R-devel >>>>> on Sun, 23 Jun 2019 10:34:47 -0700 writes: > include/Rmath.h declares a set of 'logspace' functions for use at the C > level. I don't think there are core R functions that call

Hi, Do you know whether it is possible to use wildcards in download.file()? For example: url = "ftp://abc.com/*.*" # to download all the files in the ftp folder download.file(url,destfile=...) # does not work, any solutions? Thanks! JIng

Hello all, To calculate the power of a matrix, I used the command "mtx.exp(X, n)", but there is an error saying "Error: couldn't find function "mtx.exp"". How can I deal with this problem? Jing

Hi again, I realised it is useful to replicate the warnings locally without relying on CRAN automatic check; instead of R(-devel) CMD check --as-cran package_version.tar.gz one can use R CMD check --configure-args="" and in my case the WARNINGS were initially given with https://www.stats.ox.ac.uk/pub/bdr/gcc9/README.txt and those specification might as well used in --configure-args

Hello, Well, try it: p <- .Machine$double.eps^seq(0.5, 1, by = 0.05) z <- qnorm(p/2) pnorm(z) # [1] 7.450581e-09 1.228888e-09 2.026908e-10 3.343152e-11 5.514145e-12 # [6] 9.094947e-13 1.500107e-13 2.474254e-14 4.080996e-15 6.731134e-16 #[11] 1.110223e-16 p/2 # [1] 7.450581e-09 1.228888e-09 2.026908e-10 3.343152e-11 5.514145e-12 # [6] 9.094947e-13 1.500107e-13 2.474254e-14 4.080996e-15

?s 11:46 de 16/04/2024, jing hua zhao escreveu: > Dear R-developers, > > I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, > > Gene,SNP,prot,log10p > YWHAE,13:62129097_C_T,1433E,7.35 > YWHAE,4:72617557_T_TA,1433E,7.73 >

Dear R-users, I don't know if there is a problem in wtd.quantile (from library "Hmisc"): -------------------------------- x <- c(1,2,3,4,5) w <- c(0.5,0.4,0.3,0.2,0.1) wtd.quantile(x,weights=w) ------------------------------- The output is: 0% 25% 50% 75% 100% 3.00 3.25 3.50 3.75 4.00 The version of R I am using is: 2.1.0 Best,Jing

Dear List: I have been using the MASS package until 5 minutes ago. I just updated some packages from CRAN, something happened and R crashed. I then started R again and tried to source in some code that calls MASS, but received an error that there is not a package called MASS. I then went to install packages from CRAN and MASS was not visible as an option and I then went to the CRAN website and

Hi All, I wonder if there should be one character for quote= in read.table, i.e., > args(read.table) function (file, header = FALSE, sep = "", quote = "\"'", dec = ".", ... I have a file containing the following lines, 08248-GOTERM 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process 08279-GOTERM 3'-phosphoadenosine

Dear R list, I calculated a two-sided p values according to 2*(1-pnorm(8.104474)), which gives 4.440892e-16. However, it appears to be 5.30E-16 by a colleague and 5.2974E-16 from SAS. I tried to get around with mvtnorm package but it turns out to be using pnorm for univariate case. I should have missed some earlier discussions, but for the moment is there any short answer for a higher

No, that will make it even worse since you'll be declaring a lot more memory that you actually have. The real problem is that you're ignoring the truncation, so you probably want to use something like if (snprintf(tempname, sizeof(tempname), "%s.%d", of1name, j) >= sizeof(tempname)) Rf_error("file name is too long"); BTW: most OSes systems have a path limits that

Hi, I tried to use strsplit for separating a string with || like strsplit(string,"\\||") but it returned each single character was separated. For example: strsplit("a||bc","\\||") [[1]] [1] "a" "" "" "b" "c" where I want the result to be "a" and "bc". Any ideas? Thanks! Best,

Dear R users, I want to do discriminant analysis on my data. I have successfully followed the discriminant analysis in V & R on the iris data: > ir <- rbind (iris3[,,1],iris3[,,2],iris3[,,3]) > ir.species <- c(rep("s",50),rep("c",50),rep("v",50)) > a <- lda(log(ir),ir.species) > a$svd^2/sum(a$svd^2) [1] 0.996498601 0.003501399 > a.x <-