similar to: help installing packages

Updating my 1.8.0 R installation (>update.packages() ) I obtain the following (SORRY FOR THE LENGTH OF THE LOG BUT IT HELPS!!!): ................ downloaded 135Kb KernSmooth : Version 2.22-11 in /usr/lib/R/library Version 2.22-12 on CRAN Update (y/N)? y mgcv : Version 0.9-3.1 in /usr/lib/R/library Version 0.9-6 on CRAN Update (y/N)? y trying URL

Full_Name: Jarno Tuimala Version: 2.3.1 OS: Solaris / Linux Submission from: (NULL) (193.166.2.98) Today I downloaded the latest source code release R-2.3.1.tar.gz, and it seems not to contain the VR bundle. After running ./configure I get the following error message: checking for recommended packages... ./src/library/Recommended/VR_*.tar.gz: No such file or directory no configure: error: Some

Hello, I'm using R 1.40 on MacOS X X.1.2 (installed via the fink package manager). To upgrade my installed packages, I tried to use update.packages() today. All went well for most packages, with the exception of KernSmooth and cluster. In both cases, libraries were not found although I think they are present. Here's what happened: ---------------------------------- >

I always followed http://cran.r-project.org/bin/linux/ubuntu/ to install R on Ubuntu 8.1. I had no errors before! > install.packages("XML") Warning in install.packages("XML") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

I had run into problems when compiling some contributed packages to an installation of R 1.40 by fink on MacOS X. Namely, packages KernSmooth (2.22-7) and cluster (1.4-0) would not find required libraries, though those were present on the system. Jeff Whitaker, the maintainer of the R fink packages, kindly sent me this: > Kaspar: It's not looking in /sw/lib, where the libs are (the

Dear cateGOry experts, hyperGTest documentation states that YEAST cannot be used as 'annotation' when evaluating gene ontology representation status for a given set of 'geneIds'. Because I am using a custom print I believe I need to create my own data package to use as the annotation file for 'annotation'. Can someone please describe how to make a data package that will

Well, I've found that the line in INSTALL that gives the problem is gzip -dc "${1}" | (cd "${tmpdir}" && tar -xf -) ("tar: /usr/local/lib/libpthread.so.0: version `GLIBC_2.2' not found (required by /lib/librt.so.1)") If I run that command from the shell, i.e., gzip -dc KernSmooth_2.22-7.tar.gz | (cd /tmp/R.INSTALL.2186 && tar -xf -) it runs

I would like to get the fortran code for the functions locpol and dpill in the kernsmooth library , the purpose is to incorporate other selection criterion for the bandwidth in which a varying bandwidths are replaced instead of the constant bandwidth. I will send you back the improved version as soon as I get the fortran code for the upper mention functions. ((LOCPOLY and DPILL )))

this is not a problem with R but a request for related advice. i am trying to run a lengthy batch job from my home. the OS is ... Linux jedi.bwh.harvard.edu 2.4.22-openmosix1smp #1 SMP Fri Sep 5 01:05:37 CEST 2003 i686 athlon i386 GNU/Linux i start the job and put it in the background. while i am connected, all is well. eventually my ISP shuts down the connection if i do not do any input.

I have produced a series of graphs with the png command, however when I have finally printed these out the black text appears to have a colour shadow with blue or red on either side of the letter. I tried increasing my res to 1200 and this improved it somewhat, but the text is still not sharp and occassionally these "shadows" will still print. I initially thought this was an issue with

Hi, I installed SJava 0.66-1 on my linux RH 7.2 machine. I am using R-1.7.1. I set LD_LIBRARY_PATH up then called library(SJava) and it was fine. But when I called .JavaInit(), I got weird error that states it could not find java/lang/Hashtable. The session is below and shows my java configuration. I am using j2sdk1.4.2_01 from Sun. Thank you very much. Weiming Zhang > .javaConfig

Hi, I have problems installing RMySQL under R1.8.1 and RHlinux (kernel2.4.7). During compilation I get: ** libs gcc -I/usr/lib/R/include -I/usr/include/mysql -I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -fPIC -O2 -m486 -fno-strength-reduce -g -c RS-DBI.c -o RS-DBI.o gcc -I/usr/lib/R/include -I/usr/include/mysql -I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -fPIC -O2 -m486

Building vorbis-tools out of today's CVS (Jan 30) on Linux/i386 has a few problems. 1) Building oggenc: gcc -DPACKAGE=\"vorbis-tools\" -DVERSION=\"1.0prebeta4\" -I. -I. -pipe -O2 -m486 -fno-strength-reduce -c platform.c platform.c:55: warning: garbage at end of `#ifdef' argument 2) Building ogg123: gcc -DPACKAGE=\"vorbis-tools\"

In reference to the thread http://tolstoy.newcastle.edu.au/R/devel/04/10/0859.html I have the same problem updating packages with newly-installed version of released version of R 2.0.1. Previous posts refer to a bug in windows. I wonder if there is a work-around? This probably should go to R-help but it follows on from the post in R-devel. Apologies in advance. OS: Windows XP Professional,

What risk exists in changing the check for the matching version of openssl so that the final letter part of the version (e.g. 0.9.6c vs. 0.9.6d) is ignored? Are there any security vulnerabilities in such a thing? What if ssh(d) is linked against an older _letter_ version such as 0.9.6c and now finds the library is 0.9.6d? Is there a security risk in that? Surely a major API change would not

Has anyone successfully compiled mpg123 in the 1.0.x or 1.2beta1 distributions (I'm running FC3 linux on an Opteron 2 processor system)? Are there any patches out there to make it work? gcc -DI386_ASSEM -DPENTIUM_OPT -DREAL_IS_FLOAT -DLINUX - DREAD_MMAP -DOSS -DTERM_CONTROL -Wall -O2 - m486 -fomit-frame-pointer -funroll-all- loops

Introduce the basic VMI sub-arch configuration dependencies. VMI kernels only are designed to run on modern hardware platforms. As such, they require a working APIC, and do not support some legacy functionality, including APM BIOS, ISA and MCA bus systems, PCI BIOS interfaces, or PnP BIOS (by implication of dropping ISA support). They also require a P6 series CPU. Signed-off-by: Zachary Amsden

Introduce the basic VMI sub-arch configuration dependencies. VMI kernels only are designed to run on modern hardware platforms. As such, they require a working APIC, and do not support some legacy functionality, including APM BIOS, ISA and MCA bus systems, PCI BIOS interfaces, or PnP BIOS (by implication of dropping ISA support). They also require a P6 series CPU. Signed-off-by: Zachary Amsden

Hi, I am a Ph.D. student from Québec, Canada. I’m a beginner with R and Bioconductor. Until now the only experience I have is in analyzing microarray data using affy and limma packages. Now I am trying to analyze Rat Gene 10 st arrays and I would like to run RMA analysis and Smyth moderated t test on those arrays. Since no cdf official package is available for those arrays, after reading many

Dear all yesterday I got around to install R-1.5.1 on my machine at home which, admittedly, is running a very old version of RedHat Linux. I noticed two things: 1) My pdflatex version is too old to produce the pdf version of the manuals. `./configure' checks whether a recent version of makeinfo is installed and tells you whether you can produce the info version or not. (I was told I