similar to: JAGS 3.0 and the Ubuntu repositories: A fix for jrags users

Hello folks Earlier versions of jags and rjags installed on my system without any difficulty, but I'm having trouble with jags version 4.3.0-1ubuntu2~ubuntu14.04.1~ppa1 (from Michael Rutter's R ppa) and rjags version 4.6. The call to install.packages() I always used successfully now produces the error "cannot link to JAGS library in /usr/lib/x86_64-linux-gnu."? shown below

I know this has been covered before but I have read all the posts on this subject but I still cannot resolve it. I tried to install rjags on a 64bit Fedora 17 and I got this error message Error : .onLoad failed in loadNamespace() for 'rjags', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/usr/lib64/R/library/rjags/libs/rjags.so':

It turns out that when I use GUI (file-change dir) to set the working directory, R will crash. If I use setwd() instead, the example runs well. Regards, On 4 April 2011 00:17, Wincent <ronggui.huang@gmail.com> wrote: > OK, I dig into the problem and found that Chinese character in the path > should be blamed. > Once the path rename to English only, it works. > > Regards,

Anyone used jags.parallel in latest version of R2jags? Ubuntu Oneiric, just ran updates in R to get latest R2jags package which supposedly has added jags.parallel command to send chains to multiple cores ... but when I submit, I get: test <- jags.parallel(d, inits, param, model.file="rats.bug", n.chains=3, n.iter=2000) Error: could not find function

May I request that Dirk's package for jags be added to the CRAN archives for Debian and Ubuntu? Installing the rjags package for R requires specific versions of jags to be present on the system. The current version of rjags requires jags version 2.2.0 or later but the version on the Ubuntu archives at Canonical (i.e. not the CRAN archives) is 2.1.0-2 I can always install Dirk's package

Hello, In WinBUGS 1.4 manual (http://www.mrc-bsu.cam.ac.uk/bugs/winbugs/manual14.pdf), the gamma density is presented as dgamma(r,mu) where r and mu are the shape and rate parameters, respectively. In JAGS (rjags) manual version 1.0.2, May 9, 2008 (http://www-fis.iarc.fr/~martyn/software/jags/jags_user_manual.pdf), on page 26 the gamma density is presented as dgamma(mu,r) instead of dgamma(r,mu).

I have been having trouble with rjags on Ubuntu 10.04 > library(rjags) Loading required package: coda Loading required package: lattice linking to JAGS 3.2.0 module basemod loaded Error : .onLoad failed in loadNamespace() for 'rjags', details: call: dyn.load(file) error: unable to load shared object '/usr/lib/JAGS/modules-3/bugs.so': /usr/lib/JAGS/modules-3/bugs.so:

Frank (or anyone else), can you offer any comments comparing runjags, R2jags, rjags ? I couldn't find any vignettes, nothing except a brief mention on Task Views. Kevin On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu > wrote: > Have you tried the rjags package which uses the jags system? It is much > more integrated into R and works quite well.

There is a thread on this topic already: http://finzi.psych.upenn.edu/Rhelp10/2010-August/250934.html I'm rather mystified by a similar problem and wondering whether I've overlooked something obvious. I'm running with latest versions of R and all packages, and latest version of JAGS running under Windows 7. Here's the problem. I have some source code. It's given below -

Hi, I'm trying to install rjags and R2jags with R version 2.14.1 (2011-12-22) on Linux Mint 12 machine using software repository: deb http://cran.fhcrc.org/bin/linux/ubuntu oneiric/ jags seems to install OK, but rjags gives a weird error about not finding fprec symbol. Here is a history of the problem including several attempts to work around it. (Because of Ben Bolker's recent

Trying to install latest rjags (3-5) from CRAN with JAGS 3.2.0 installed on Ubuntu 10.04, with r-devel ... the bottom line is that it fails while loading with /libs/rjags.so: undefined symbol: _ZN7Console15checkAdaptationERb Has anyone else seen this or is it a glitch somewhere in my system? thanks Ben Bolker ================== bolker at ubuntu-10-new:~/R/pkgs/rjags$ jags Welcome to

Hi, With the sid package jags (2.0.0-1) and r-base-core (2.11.0-1), I cannot install package rjags anymore (this used to work at some point; can't recall exactly at what R/JAGS versions): ---<--------------------cut here---------------start------------------->--- R> install.packages("rjags", configure.args="--with-jags-modules=/usr/lib/JAGS/modules-2.0.0")

Hi, Here is a step-by-step guide to exactly how I've installed R in Ubuntu: http://www.nabble.com/installing-R-on-Ubuntu-td10025949.html#a21894865 Regarding rjags, here is what happened: This webpage (http://yusung.blogspot.com/2009/01/install-jags-and-rjags-in-fedora.html) recommends logging into R as sudo R, and then typing: install.packages("rjags",

Hi All, I am trying to install the package rjags into a local library on a machine for which I do not have root permissions. Using the command: R CMD INSTALL --configure-args="--with-jags-include= ${JAGSBIN}/include/JAGS --with-jags-lib=${JAGSBIN}/lib/ --with-jags- modules=${JAGSBIN}/lib/JAGS/modules" CMD INSTALL -l ${JAGSBIN}/lib/ ../ rjags_1.0.3-12.tar.gz Where ${JAGSBIN} is

Greetings, I wonder if anyone can offer any help or advice--even direction to an appropriate source of advice. I am trying to install rjags 1.0.1 on Mac OS X 10.5 (see http://www-fis.iarc.fr/~martyn/software/jags/). I have R.app 2.6.1 installed. JAGS 1.0.1 is apparently successfully installed. I (think I) know this because when I type 'jags' into Terminal, I get the following:

Dear list, I ran into problem trying to load rjags on my Macbook Air running OS X 10.7.1. I installed JAGS 3.1.0 through binary and it seems OK. $ jags Welcome to JAGS 3.1.0 on Fri Sep 16 13:27:03 2011 JAGS is free software and comes with ABSOLUTELY NO WARRANTY Loading module: basemod: ok Loading module: bugs: ok Then I installed rjags through CRAN, >

Greetings. Running Fedora Cora 8 on multi-Opteron system - full 32- and 64-bit libs installed (R compiled 64-bit on this machine). R 2.9.0 - libs sitting in /usr/local/lib64/R/library. Trying to install JAGS, with rjags. Partial success. For JAGS install: |./configure --with-jags-modules=/usr/local/lib/JAGS/modules --libdir=/usr/local/lib64 make make check make install Seems to work / no

Recently installed 2.12.1 on my CentOS 5.5 box. Install of R went without incident, and packages downloaded and compiled fine. With one exception -- my interest is somewhat in the problems with this particular package, but more in terms of 'what to do if/when a package' doesn't compile properly. The offending package (in this instance) is rjags. When I try to install it using

Quick followup. Confirmed that TCl/Tk are both installed on the machine (they are, in both 32- and 64-bit flavours), as are all tcl and tk-related libs, devel packages, and about everything else I could find. It occurred to me that perhaps the R I compiled isn't 'tcltk' aware. I checked the config.log, and there is some hint that this might be the case. Just before ## File

While I have been able to install rjags on my Windows computer, oddly I have been unable to install rjags successfully on my 64-bit Linux compute server (etch, Linux kernel 2.6.18). I am required to specify the JAGS module directory upon installation; when doing this within R, I get: