Displaying 20 results from an estimated 4000 matches similar to: "Request for jags package to be added to CRAN Debian/Ubuntu archives"
2012 Jan 12
1
Can't install rjags on LinuxMint 12
Hi,
I'm trying to install rjags and R2jags with R version 2.14.1 (2011-12-22)
on
Linux Mint 12 machine using
software repository:
deb http://cran.fhcrc.org/bin/linux/ubuntu oneiric/
jags seems to install OK, but rjags gives a weird error about not finding
fprec symbol.
Here is a history of the problem including several attempts to work
around it.
(Because of Ben Bolker's recent
2017 Sep 29
1
problem with rjags installation in ubuntu 14.04
Hello folks
Earlier versions of jags and rjags installed on my system without any
difficulty, but I'm having trouble with jags version
4.3.0-1ubuntu2~ubuntu14.04.1~ppa1 (from Michael Rutter's R ppa) and
rjags version 4.6.
The call to install.packages() I always used successfully now produces
the error "cannot link to JAGS library in /usr/lib/x86_64-linux-gnu."?
shown below
2012 Sep 20
1
rjags install on Ubuntu 10.04
I have been having trouble with rjags on Ubuntu 10.04
> library(rjags)
Loading required package: coda
Loading required package: lattice
linking to JAGS 3.2.0
module basemod loaded
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file)
error: unable to load shared object '/usr/lib/JAGS/modules-3/bugs.so':
/usr/lib/JAGS/modules-3/bugs.so:
2011 Jul 15
0
JAGS 3.0 and the Ubuntu repositories: A fix for jrags users
Ubuntu R users,
Early this month, version 3.0 of JAGS was released on its Sourceforge
page. Dirk Eddelbuettel and I quickly rolled up packages for Debian and
Ubuntu, respectively. If you are an Ubuntu user who utilizes my
Launchpad PPA for your R related .deb files, JAGS was updated automatically.
The downside to this is that JAGS 3.0 is not compatible with the R
package rjags, also found
2012 Jan 10
1
rjags installation trouble
Trying to install latest rjags (3-5) from CRAN with JAGS 3.2.0
installed on Ubuntu 10.04, with r-devel ... the bottom line is that it
fails while loading with
/libs/rjags.so: undefined symbol: _ZN7Console15checkAdaptationERb
Has anyone else seen this or is it a glitch somewhere in my system?
thanks
Ben Bolker
==================
bolker at ubuntu-10-new:~/R/pkgs/rjags$ jags
Welcome to
2010 May 04
1
errors when installing rjags
Hi,
With the sid package jags (2.0.0-1) and r-base-core (2.11.0-1), I cannot
install package rjags anymore (this used to work at some point; can't
recall exactly at what R/JAGS versions):
---<--------------------cut here---------------start------------------->---
R> install.packages("rjags", configure.args="--with-jags-modules=/usr/lib/JAGS/modules-2.0.0")
2009 Feb 08
1
Error installing rjags in Ubuntu Linux
Hi,
Here is a step-by-step guide to exactly how I've installed R in Ubuntu:
http://www.nabble.com/installing-R-on-Ubuntu-td10025949.html#a21894865
Regarding rjags, here is what happened:
This webpage
(http://yusung.blogspot.com/2009/01/install-jags-and-rjags-in-fedora.html)
recommends logging into R as sudo R, and then typing:
install.packages("rjags",
2008 Jun 25
1
dgamma in WinBUGS and JAGS (rjags)
Hello,
In WinBUGS 1.4 manual
(http://www.mrc-bsu.cam.ac.uk/bugs/winbugs/manual14.pdf), the gamma
density is presented as dgamma(r,mu) where r and mu are the shape and
rate parameters, respectively. In JAGS (rjags) manual version 1.0.2,
May 9, 2008 (http://www-fis.iarc.fr/~martyn/software/jags/jags_user_manual.pdf),
on page 26 the gamma density is presented as dgamma(mu,r) instead of
dgamma(r,mu).
2007 Dec 30
2
Trying to install rjags on Mac OS X 10.5
Greetings,
I wonder if anyone can offer any help or advice--even direction to an
appropriate source of advice. I am trying to install rjags 1.0.1 on Mac OS X
10.5 (see http://www-fis.iarc.fr/~martyn/software/jags/). I have R.app 2.6.1
installed.
JAGS 1.0.1 is apparently successfully installed. I (think I) know this because
when I type 'jags' into Terminal, I get the following:
2008 Nov 08
3
unable to install rjags on 64-bit Debian Linux (etch)
While I have been able to install rjags on my Windows computer, oddly I
have been unable to install rjags successfully on my 64-bit Linux
compute server (etch, Linux kernel 2.6.18). I am required to specify
the JAGS module directory upon installation; when doing this within R, I
get:
2010 Dec 20
1
R hangs on the stats.so library
Dear all,
I having this problem on my laptop.
It was caused by my clumsy attempts to upgrade the system.
As I wrote here,
(http://www.mail-archive.com/r-sig-debian at r-project.org/msg01364.html)
I was trying to solve the same problem with JAGS/rjags on my laptop.
After typing R in a terminal I'm currently get the following:
> R version 2.9.0 (2009-04-17)
> Copyright (C) 2009 The R
2010 May 27
3
rjags in Ubuntu 10.04
I've not been able to install rjags successfully in Ubuntu 10.04 :
** testing if installed package can be loaded
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared library
'/home/scott/R/i486-pc-linux-gnu-library/2.11/rjags/libs/rjags.so':
libjags.so.2: cannot open shared object file:
2009 Nov 20
1
Including local dynamic libraries
Hi All,
I am trying to install the package rjags into a local library on a
machine for which I do not have root permissions.
Using the command: R CMD INSTALL --configure-args="--with-jags-include=
${JAGSBIN}/include/JAGS --with-jags-lib=${JAGSBIN}/lib/ --with-jags-
modules=${JAGSBIN}/lib/JAGS/modules" CMD INSTALL -l ${JAGSBIN}/lib/ ../
rjags_1.0.3-12.tar.gz
Where ${JAGSBIN} is
2011 Jan 06
1
steps for problems compiling a package
Recently installed 2.12.1 on my CentOS 5.5 box. Install of R went
without incident, and packages downloaded and compiled fine. With one
exception -- my interest is somewhat in the problems with this
particular package, but more in terms of 'what to do if/when a package'
doesn't compile properly.
The offending package (in this instance) is rjags. When I try to install
it using
2009 Apr 30
1
[Fwd: problems installing rjags | tcltk]
Quick followup. Confirmed that TCl/Tk are both installed on the machine
(they are, in both 32- and 64-bit flavours), as are all tcl and
tk-related libs, devel packages, and about everything else I could find.
It occurred to me that perhaps the R I compiled isn't 'tcltk' aware. I
checked the config.log, and there is some hint that this might be the
case. Just before ## File
2014 Apr 18
3
Can the output of Sys.getenv() be improved?
Within an R session, type Sys.getenv() will list all the environment variables, but each one of them occupies about a page, so scrolling to find one is difficult. Is this because I don't know how to use it or something could be improved? Usually I'm not sure the exact name of a variable but want to look it up. Recently I installed rjags, with the JAGS-3.4.0's lib, include, modules
2011 Aug 11
1
R crashes when communicating with JAGS
There is a thread on this topic already:
http://finzi.psych.upenn.edu/Rhelp10/2010-August/250934.html
I'm rather mystified by a similar problem and wondering whether I've
overlooked something obvious. I'm running with latest versions of R and
all packages, and latest version of JAGS running under Windows 7.
Here's the problem. I have some source code. It's given below -
2011 May 12
1
can't run rjags package in R project
i've windows 7 64 bit operating system
i run latest jags backage 2.2
i make set enviroment variable for JAGS_home because the rjags in r program
couldn't see the JAGS sw
now the error is the following:
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: inDL(x, as.logical(local), as.logical(now), ...)
error: unable to load shared object 'D:/Program
2009 Oct 07
1
Which JAGS interface to use?
Frank (or anyone else), can you offer any comments comparing runjags,
R2jags, rjags ?
I couldn't find any vignettes, nothing except a brief mention on Task Views.
Kevin
On Wed, Oct 7, 2009 at 7:48 AM, Frank E Harrell Jr <f.harrell@vanderbilt.edu
> wrote:
> Have you tried the rjags package which uses the jags system? It is much
> more integrated into R and works quite well.
2012 Jan 13
1
R2jags update, jags.parallel
Anyone used jags.parallel in latest version of R2jags?
Ubuntu Oneiric, just ran updates in R to get latest R2jags package which
supposedly has added jags.parallel command to send chains to multiple
cores ... but when I submit, I get:
test <- jags.parallel(d, inits, param, model.file="rats.bug",
n.chains=3, n.iter=2000)
Error: could not find function