similar to: Trouble compiling Java-based R packages

Installing rJava fails consistently, whether installed via the command line as below, or through "install.packages( 'rJava' )", and whether 0.84 or 0.85 is used, with the message :- "checking JNI data types... configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to

Hi folks: I'm trying to update my JGR and related packages, but run into a compile problem, that I suspect must be affecting others. I get this output when compiling rJava, JavaGD, etc.: ## checking Java support in R... present: interpreter : '/usr/bin/java' cpp flags : '' java libs : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server

I remember JGR installation on SuSE 10.3 as a nightmare that eventually I overcame with JGR designers' help. I have installed SuSE 11.1, latest R version and am trying to install JGR again. It is still a nightmare. I have followed the guidelines on http://jgr.markushelbig.org/JGR_on_Linux.html I have made sure I have the so R libraries. I have installed java-1.6.0-sun and its development

Hello, I cannot get JGR installed. Here is what I have tried so far http://wiki.ubuntuusers.de/R 1. sudo -s # root werden R CMD javareconf root at gunnar-laptop:~# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.5.0_18 Java home path : /usr/lib/jvm/java-1.5.0-sun-1.5.0.18/jre Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive

Good afternoon, A strange one - library(rJava) works for root but not for user sean On 64-bit Ubuntu 9.10, using R as root (sudo -i), I can say library(rJava) and it works fine with no error message of any kind. But logged in as myself user "sean", it can't start... sean at SeansPC:~$ R --no-save --vanilla R version 2.10.1 (2009-12-14) Copyright (C) 2009 The R Foundation for

Hallo Zusammen, hatte gestern die Schnauze voll von Vista und habe mir daraufhin Ubuntu installiert. Bin also mit Ubuntu ?berhaupt nicht vertraut. Nun habe ich ohne Erfolg versucht, R zu installieren. Soweit ich der Anleitung folgen konnte habe ich es so wie auf http://wiki.ubuntuusers.de/R gemacht. Im Terminal kann ich R problemlos starten. Allerdings bei der Installation von

Hi Jeff!! I really don?t know if running R CMD javareconf with sudo has posed a problem here, now or in the past. What I know is sometimes it?s the only way to really config it, if I don?t run with sudo, in the end it asks me if I want to overwrite the configuration from root override rw-r--r-- root/admin for /usr/local/Cellar/r/3.4.4/lib/R/etc/Makeconf? (y/n [n]) y override rw-r--r--

I am not a Mac user, but I do use Linux and I would recommend not running R with sudo unless you are an admin ninja. That defensive practice would render the answer to your question moot. It is possible that your problem may have started with inappropriate use of sudo in configuring java, but configuring Java is not on-topic here. -- Sent from my phone. Please excuse my brevity. On March 27,

Hi, I am unable to install the package rJava. I tried doing what the output suggests, but it doesn't help. How can I get R to find/recognize my Java installation? I am running R-2.15.0. waichler at snow> sudo R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_22 Java home path : /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre Java compiler : /usr/bin/javac Java

Hi! I?m on macOS 10.13.3 and just installed the new Java 10 using Homebrew Cask. I also have installed R with Homebrew. Everything seems to work fine, however I just get different outputs if I run sudo R CMD javareconf or R CMD javareconf. With sudo I get pointed to Java 9 and without sudo I get pointed to Java 10. I really don?t know why. Without sudo: $ R CMD javareconf

> library(rJava) Error in library(rJava) : there is no package called 'rJava' > install.packages("rJava") Warning in install.packages("rJava") : argument 'lib' is missing: using '/usr/local/lib/R/site-library' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

Esteemed useRs and Devs, Attempts to update package:rJava to the latest version have failed. See my code and output below. Notably, as suggested here http://stackoverflow.com/questions/3311940/r-rjava-package-install-failing $ sudo apt-get install r-cran-rjava ran successfully without error or warning, but my rJava package is not updated, and remains un-updatable... Greatly appreciate any

Hi, I use Redhat Linux for R. Now I am trying to use the rJava library. I downloaded JRE beta 2 from Sun. I typed root@~]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0-beta2 Java home path : /usr/java/jre1.6.0 Java library path: $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64::/usr/java/packages/lib/amd64:/lib:/usr/lib JNI linker

Hi, I was trying install rJava package but failed to install with below error: *trying URL 'https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz <https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz>'* *Content type 'application/x-gzip' length 675188 bytes (659 KB)* *==================================================* *downloaded 659 KB* ** installing

Hi All, Running R CMD javareconf -e (or R CMD javareconf as root I am rot on my machines) Fails. / [root at penguins1lanalt etc]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_30 Java home path : /usr/java/jre1.6.0_30 Java compiler : not present Java headers gen.: Java archive tool: Java library path:

Thanks Dirk and Enrico, First clarification: I'm in this mess because I'm trying to run R 3.5.2 within Debian stable (9/"sretch") using the stretch-cran35 repository. That uses and provides r-api-35 but many of the packages depend upon r-api-3. As Johannes said a day or so back, the way around this is to use install.packages() in R to get the packages you want. That leads you

I encountered some failures in using install.packages() to install rgl and rJava in some of my (multiple) Ubuntu Hardy systems. A quick search of the 'Net did not show any debian packages for these. The install.packages messages said header or other files were missing, suggesting path and related woes. Email with Duncan Murdoch (thanks!) pointed the way with rgl and led to a fix for rJava

Has anyone successfully installed rJava on Debian squeeze (or any other version of linux)? I keep getting the ... (JDK) is missing or not registered in R error message when installing the package. I've tried running 'R CMD javareconf', setting JAVA_HOME and editing /etc/R/ldpaths by hand, but to no avail. The problem might be related to the R_JAVA_LD_LIBRARY_PATH that's

On 29/03/2020 04:07, Simon Urbanek wrote: > Spencer, > > you could argue that Java is dead since Oracle effectively killed it by removing all public downloads, but if you manage to get hold of a Java installation then it works just fine with R. To my best knowledge there has never been an issue if you installed rJava from source. macOS Catalina has made binary distributions impossible

Hi all, i'm trying to install JGR on linux (see bottom), but it runs into errors. The bottom of the sequence below shows "JavaJD could not be found" Any suggestion, please? $ sudo apt-get install sun-java6-jdk $ sudo update-alternatives --config java There are 5 alternatives which provide `java'. Selection Alternative ----------------------------------------------- 1