similar to: how to convert source code in windows package for linux (ubuntu)

List, In order to get rid of some old, unreadable S3 code in package sp, I'm trying to rewrite things using S4 methods. Somewhere I fail, and I cannot sort out why. In order to isolate the problem, I created two functions, doNothing<- and dosth, and both should do nothing. The issue is that in most cases they do nothing, but in some cases dosth(obj) changes the class of obj and breaks with

When running a = runif(10) class(a) = "foo" Math.foo = function(x, ...) { NextMethod(.Generic) } signif(a, 3) cumsum(a) I don't understand why cumsum strips the class, but signif does not. Both claim in the documentation that "These are generic functions: methods can be defined for them individually or via the ?Math? group generic." -- Edzer Pebesma Institute for

Suppose I'm author of a package on which quite a few other packages depend. When I submit to CRAN, I run R CMD check on it, Kurt does that too, and if things work out fine, it is accepted. When one or more of the packages that depend on it break because of my changes, however, hell breaks loose. I would like to extend my testing (currently: R CMD check pkg) to running R CMD check on all

Hi Thanks for that, but I still cannot confirm on ... sudo docker run -v $(pwd):/home/work/ -w /home/work --rm -ti rocker/r-ver:3.5.1 Could you please read the comments within the "Cairo Fonts" section of the ?X11 help page, in case that offers some explanation. Paul On 29/08/18 02:15, Martin M?ller Skarbiniks Pedersen wrote: > On Fri, 24 Aug 2018 at 19:53, Edzer Pebesma >

A while ago our institute was approached by a large company, say XXX, who asked whether we would like to become an Xxx development center, as we are active in the same area. After some negotation we did, believing there will be mutual benefits. Some time later, after putting up the Xxx development center logo on the institute home page, my feeling grew that we are also, and probably to a larger

In plotmath expressions, R's degree symbol, e.g. shown by plot(1, main = parse(text = "1*degree*C")) has sunk to halfway the text line, instead of touching its top. In older R versions this looked much better. -- Edzer Pebesma Institute for Geoinformatics Heisenbergstrasse 2, 48151 Muenster, Germany Phone: +49 251 8333081

Dear All I would really appreciate some help with a script which a colleague wrote for me, but I am having problems running (and have not been able to contact my colleague). The script is designed to compare the area of suitable habitat in binary projections of a large number of species current and future distributions, and create an excel file detailing the total area suitable in the

Hi, I am very new to R and I am trying to write KML files. I am running R-2.13.1 and I have the following packages: - AKIMA - RGDAL - RSAGA - SP I was trying to run the simple example that I found at the following web page: http://spatial-analyst.net/wiki/index.php?title=Export_maps_to_GE The lines that I can run are: data(meuse.grid)

The following now occurs to me when I try to load lattice (R 1.7.1, debian stable): > library(lattice) Error in loadNamespace(i, c(lib.loc, .libPaths()), keep.source) : package `grid' does not have a name space Error in library(lattice) : package/namespace load failed I did an update.packages() as root recently. Any idea what's wrong? -- Edzer

Hi all, I am running into problems using `summary.lm` as calling `var` on a `units` object does not retain the `units` attribute. The units package addresses this issue for `mean` by implementing `mean.units`: units:::mean.units function (x, ...) { .as.units(NextMethod(), units(x)) } This is, however, not possible for `var` (as it's not a generic), which breaks `summary.lm`: ```

Hello, I discovered SAGA, an interesting free GIS, a few days ago and now, I would like to use it from within R 2.6.2 using the RSAGA package. I read the documentation for this package and thought that I understood it correctly for trying to call some of the SAGA modules. For getting the information on the usage of and arguments required by the SAGA command line "Import Binary Raw

Thanks to Edzer and Roger, I can now plot with increased font sizes. However, jpeg still does not reproduce these, nor does it show up in high quality. What I would like to do is produce some highresolution jpegs. Any help would be appreciated Thanx Herry R2.4 on Mandriva 10.2 linux. Dr Alexander Herr Spatial and statistical analyst CSIRO, Sustainable Ecosystems Davies Laboratory, University

Hi I am seeking to understand why the methods package (to be specific `methods:::.findOrCopyClass` when called by `setIs` when called by `setClass`) emits a warning message such as ` class "SpatialLinesNULL" is defined (with package slot 'rgeos') but no metadata object found to revise subclass information---not exported? Making a copy in package 'minweSpatialNULL `

In the example: x = rep(c(0,0,1,1),4) y = rep(c(0,1,0,1),4) z = c(1,0,1,0,0,0,1,1,0,1,0,0,1,1,1,1) f = as.factor(c(rep("a",4),rep("b",4),rep("c",4),rep("d",4))) levelplot(z~x+y|f,data.frame(x=x,y=y,z=z,f=f)) I noted that the last ("d") plot remains empty. I guess the reason for this is that the values are constant (1), but I consider it more

G'day all, I am not sure whether I should file this as a bug report, but I thought that I should make the developers of R aware of the following feature: I have just installed R 2.0.0 and when I run "R CMD check" on the source of some packages, I noticed that the XXX-examples.ps file contains one page with two graphics overlaid. This seems to happen when the first graphic is

I wonder what is the default value for the argument 'cutoff' when not specified in the variogram.formula function of gstat. Computing variogram envelops within gstat, I am comparing the results obtained with variog in geoR and variogram in gstat, and it took me a while before understanding that the cutoff default value is not the maximum distance. Can Edzer tell us about it? All the

2017-09-22 19:04 GMT+02:00 Michael Lawrence <lawrence.michael at gene.com>: > The %*% function is a primitive. As it says in the documentation under > ?Methods_Details > > Methods may be defined for most primitives, and corresponding > metadata objects will be created to store them. Calls to the > primitive still go directly to the C code, which will

Hi All, Not a new R user, but new to R with Linux, specifically Ubuntu Hardy Heron 8.04 64bit. I have had success installing common packages using the typical R interface (in Linux), but have had problems installing less common packages like (rgdal) and (RSAGA) that are not loaded with R. I'm wondering if there are any tricks to these libraries that won't install, from reading the

On looking more closely, the purpose of finding the class definition is to update the entry for the new relationship, as the warning message suggests. That requires that the namespace holding the definition be writable. In the case of subclass information, the original namespace is very likely to be locked, if it's not the package currently being loaded. Copying the definition in order to

Dear People, I'm trying to write an R wrapper for a C++ library, using .Call. I've never used .Call before. I'm currently having some difficulties converting a R character string to a C one. Here is a little test program. #include <R.h> #include <Rinternals.h> #include <stdio.h> SEXP testfn(SEXP chstr) { char * charptr = CHAR(chstr); printf("%s",