similar to: (Current) Ubuntu : r-base-dev seems incompatible with atlas-base-dev.

Hi, I'd like to install the optimized libraries on my Thinkpad with an Intel Core Solo chip, which apparently supports the following instruction sets: MMX, SSE, SSE2, SSE3 instruction sets, XD-Bit. In a recent r-help message, the following was said (by Dirk I think): <quote> Yes, on Ubuntu, use 'apt-get install atlas3-base' for basic tuned Atlas, or 'apt-get install

I feel like Marlon Brando in "On the Waterfront" where he's told "It's not your night, kid", except for me it has been the last two months trying to debug memory problems. Now I can't even install an old version of this package on a netbook running the Ubuntu 10.10 netbook remix because it can't find the libraries libf77blas and libatlas. I have even gone to

On 15 March 2012 14:09, Simon Urbanek <simon.urbanek@r-project.org> wrote: > I thought I'll post this here since I could not find an answer anywhere I > searched: how to setup R with threaded BLAS on Debian/Ubuntu. > > First, neither Debian nor Ubuntu come with optimized ATLAS binaries, > simply because by definition they need to be optimized for a particular >

I have R under Linux Kubuntu Hardy Heron 8.04 LTS. I am trying to install package 'lme4' and get the following error: ---- * installing *source* package ?lme4? ... ** libs gcc -std=gnu99 -I/usr/share/R/include -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99

Hi, I'm using Ubuntu Hardy i386, and the R 2.7.1 Ubuntu packages from CRAN. The CRAN r-base-dev package depends on refblas3-dev or atlas3-base-dev, but octave3.0-headers depends on libblas-dev. The two blas packages seem to conflict, so r-base-dev and octave3.0-headers can't be installed together. Is this a known issue? Thanks, Gad $ sudo apt-get install octave3.0-headers Reading

Hi, Since upgrading to version 2.11.0~20100402-1, starting R fails with: /usr/lib64/R/bin/exec/R: error while loading shared libraries: libblas.so.3gf: cannot open shared object file: No such file or directory Is this occurring to others on sid? -- Seb

I thought I would try compiling R this time with the ATLAS libraries. I have compiled ATLAS and I have the following libraries: libatlas.a libf77blas.a libptcblas.a libtstatlas.a libcblas.a liblapack.a libptf77blas.a Is it sufficient to use ' --with-blas=libatlas.a ' when configuring or do I need to specify any of the other libraries as well? -- William D. McCoy

food now? or after work in the library? On Wed, 2010-06-02 at 12:00 +0200, r-sig-debian-request at r-project.org wrote: > Send R-SIG-Debian mailing list submissions to > r-sig-debian at r-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://stat.ethz.ch/mailman/listinfo/r-sig-debian > or, via email, send a message with subject or body

Hello To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new tcl and liblapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : >

Dear All, As suggested in the reply from Dirk Eddelbuettel to my post to R-dev I am reposting here as the problem still persists. Please see my post to R-dev under same heading for additional description if needed. In summary I am starting from a new installation of Ubuntu 10.10 as the single operating system on a reformatted disk with just the OS, ESS and emacs installed before installing R

Hi All, I'm still having significantly difficulty getting the quantreg library running in R. I'm running R on MEPIS using the debs created by Dirk Eddelbuettel and placed in apt testing. When I try to install quantreg using the install.packages() function it fails with: /usr/bin/ld: cannot find -lblas-3 Dirk was nice enough to send me a .deb for quantreg which installs without

I just dumped Vista off a laptop and installed Ubuntu 10.10 (latest release) as the single operating system. I did all of the updates and then installed emacs and ess. Next I installed R by following the the usual instructions on the CRAN site. At this point all is working I am now in the process of installing the packages that I normally have installed. I am having a problem with the LAPACK

Has anyone succeeded in getting a parallel BLAS, such as Goto's BLAS, installed on a machine running Ubuntu 11.10? I currently have the libatlas3gf-base package installed on a machine with an AMD Athlon X4 processor. I tried to install the libopenblas-base and libopenblas-dev packages but there seemed to be a glich related to having both libopenblas and libatlas3gf installed so that when I

I am not sure if this is an R development problem or not. I am starting with completely clean OS and and installing the latest version of R without trying to anything special but I am having trouble with the LAPACK library linking when I try to build packages that require them. I thought perhaps my problem may be if interest here. I just dumped Vista off a laptop formatted the disk and

Hello, This simple SVD calculation (commands are copied immediately below) crashes on my Ubuntu machine (R 2.13.0). However it worked fine with R.12 and Ubuntu 10.04, and it also works fine on my Windows 7 machine with R 2.13, so I suspect there's a problem with (my?) Ubuntu and / or R. I'm using the R distribution that is accessible with Ubuntu's repositories manager, I am not

On 14 March 2012 at 23:09, Simon Urbanek wrote: | I thought I'll post this here since I could not find an answer anywhere I searched: how to setup R with threaded BLAS on Debian/Ubuntu. | | First, neither Debian nor Ubuntu come with optimized ATLAS binaries, simply because by definition they need to be optimized for a particular machine. The good news: it is easy to build: | | apt-get source

On two laptops running 32-bit kubuntu, I have found that svd(), invoked within R 2.9.1 as supplied with the current ubuntu package, returns very incorrect results when presented with complex-valued input. One of the laptops is a Dell D620, the other a MacBook Pro. I've also verified the problem on a 32-bit desktop. On these same systems, R compiled from source provides apparently

Dirk suggested I move this thread over here. I am trying to get a multithreaded (multi CPU) version of ATLAS working with R, and have been unable, thus far, to get it working. Has anyone gotten an multithreaded version of ATLAS working on Debian (64 bit)? I've tried this: apt-get source atlas -t unstable cd atlas-3.8.3 DEFAULTS=n fakeroot debian/rules custom but it is APPEARING to only

I looked for evidence that this is supposed to happen, as it was news to me that it did on some versions of R. Possible sources of documentation seem to be R CMD INSTALL --help ?INSTALL R-intro.texi, R-exts.texi, R-admin.texi none of which mention this AFAICS, and all seem to be written assuming an existing library tree. DId you find something to suggest otherwise? Clearly no alpha/beta

Hi, I'm trying to install R with atlas in ubuntu karmic 64. I do a lot of matrix operations so I need performance. Doing grep sse2 /proc/cpuinfo tells me tha my CPU supports SSE2. But I don't see libatlas3gf-sse2 in the package repositories. Also, there seem to be some gotchas on how to install atlas, even the vanilla one, as described here: