similar to: R CMD javareconf in r-base-dev 2.6.0

Dear list, R 2.5.0 packages for Debian stable (i386 and amd64) are now available from CRAN. The new recommended codetools and rcompgen packages haven't completely made it to Debian yet, but can of course be installed in the standard non-Debian ways. Please consult the README file in the Debian directory, and report problems to me directly or to this list. Best regards, Johannes Ranke --

Dear users of the Debian backports on CRAN, Because of an inconsistency of the README file with the actual situation on CRAN, which Ted Harding gratefully reported, I changed the archive on CRAN so the /etc/apt/sources.list entry has to be changed in case you would like to get updates of R backports to Debian stable in the future: Instead of deb

Dear R developers, I am a little disappointed that my bug report only made it to the wishlist, with the argument: Well, it does not say it has. Only relevant to prediction intervals. predict.lm does calculate prediction intervals for linear models from weighted regression, so they should be correct, right? As far as I can see they are bound to be wrong in almost all cases, if no weights

Hello Griera, sorry, I forgot an "svn add", so the package got lost on the way. It is on chem now, and will migrate to CRAN shortly. Johannes Am Montag, 25. September 2017, 10:57:37 CEST schrieb Griera: > Hello Johannes: > > I'm sorry, but I still have the same problem with Rkward. > > After running apt-get update, I still can not find the amd64 version of the

I've installed jdk-1_5_0_08-linux-i586.rpm and Tomcat. Working through some initial test install programs, I am finding that I can't seem to compile .java files into classes. For instance... javac -classpath /usr/local/tomcat/common/lib/servlet.jar HelloWorld.java as instructed fails with a gij: unrecognized option -- `-classpath' Try `gij --help' for more information. So

Dear all, I installed the amd64 cran2deb [1] JGR binaries on a fresh Debian testing, and JGR is missbehaving. When JGR starts up, one core of the CPU goes to 100% and stays there, even though I am keeping it idle and not performing any operation. I tried JGR with both sun-java6-jdk and openjdk-6-jdk, debian-liv:/home/liviu# update-alternatives --config java There are 4 choices for the alternative

4.8-stable as/of jun 9th (update scheduled) has gcc version, 2.95.4 i'm building mod_php3 (some local stuff needs a php3 processor) with mysql support. using the mysql323 client/server from ports. mysql (which i know i've built before on older stable's) reports gcc can't convert longlong to something or other... basicly saying i need a newer compiler. i'm installing gcc33

Hello Johannes: I'm sorry, but I still have the same problem with Rkward. After running apt-get update, I still can not find the amd64 version of the Rkward package. I have tried it with the following sources: deb http://cran.r-project.org/bin/linux/debian stretch-cran34/ deb http://chem.uft.uni-bremen.de/ranke/r-cran stretch-cran34/ deb

Hi Johannes: Thank you very much. Rkward now works. The only drawback is that I had to install it "by hand": sudo dpkg -i rkward_0.6.5-1~stretchcran.0_amd64.deb rkward-data_0.6.5-1~stretchcran.0_all.deb By default, apt-get installed the Debian repository version (rkward 0.6.5-1+b1 0.6.5-1+b1). Thanks for your contributions to the R-Debian project! Regards. Griera. On Mon, 25

Hi all, i'm trying to install JGR on linux (see bottom), but it runs into errors. The bottom of the sequence below shows "JavaJD could not be found" Any suggestion, please? $ sudo apt-get install sun-java6-jdk $ sudo update-alternatives --config java There are 5 alternatives which provide `java'. Selection Alternative ----------------------------------------------- 1

Hi, Is it possible to define a function in a template file? For example, I thought it might be a good idea to define my Debian systems'' /etc/apt/sources.list files based on what level of stability and freeness a system should have. So I have this puppet code: #---------- apt.pp ---------------- define apt-sources-list

I am more than 'a little disappointed' that you expect a detailed explanation of the problems with your 'bug' report, especially as you did not provide any explanation yourself as to your reasoning (nor did you provide any credentials nor references). Note that 1) Your report did not make clear that this was only relevant to prediction intervals, which are not commonly used.

Hi R-Users, I want to manipulate some strings in the following way. I have the following vector with spanish municipalities: municipios<-c("Allande", "Aller", "Amieva", "Avil?s", "Belmonte de Miranda", "Dega?a", "Franco (El)", "Gij?n", "Goz?n", "Grado", "Grandas de Salime",

Hi All, Running R CMD javareconf -e (or R CMD javareconf as root I am rot on my machines) Fails. / [root at penguins1lanalt etc]# R CMD javareconf Java interpreter : /usr/bin/java Java version : 1.6.0_30 Java home path : /usr/java/jre1.6.0_30 Java compiler : not present Java headers gen.: Java archive tool: Java library path:

Hi, my name is Julio Rojas and I've trying to get my Linux (RedHat 7.2) Email Server using Sendmail to use my NT Domain account database. To accomplish this we have tried with Winbind and it has worked for longins at the server and for POP3 authentication, but we haven't been succesful at SMTP authentication. All the emails sent to my Linux server are rejected with the message USER

Hello, I am using EC2 to launch several instances. On each instance, I perform the following commands yum -y install R (installs R-2.6) R CMD javareconf sleep 10 wget rpackage.tgz R CMD INSTALL rpackage.tgz Now, rpackage.tgz needs to be built with jni libraries. When the instance is fully up, i log in and check if rpackage was successfully installed and find out it wasn't. Running R CMD

Full_Name: Tom Callaway Version: 2.7.2 OS: Fedora 10 (Linux/x86_64) Submission from: (NULL) (96.233.67.230) Recently, Debian identified a security issue with the javareconf script in R. I confirmed that this is still unfixed in R 2.7.2. The following patch resolves the issue: diff -up R-2.7.2/src/scripts/javareconf.BAD R-2.7.1/src/scripts/javareconf --- R-2.7.2/src/scripts/javareconf.BAD

Dear R users, I d like to assess the effect of "treatment" covariate on a disease relapse risk with the package cmprsk. However, the effect of this covariate on survival is time-dependent (assessed with cox.zph): no significant effect during the first year of follow-up, then after 1 year a favorable effect is observed on survival (step function might be the correct way to say that

I recently was forced to do a dist-upgrade and rebuild my kernel, so a lot has changed on my system, and I don't know if that is related to the errors & warnings I get from apt-get update. Any ideas? thanks -Michael euclid:~# apt-get update Get: 1 http://debian.yorku.ca stable Release.gpg [378B] Get: 2 http://debian.yorku.ca stable/updates Release.gpg [189B] Get: 3

R 2.6.1 is on its way to Debian unstable. I removed the references to gcc-4.2, so backporting should be easier. One thing I lfet in was the shlibs.local which will make R depend on tk8.4 newer than what testing and Ubuntu have, so Johannes and Vincent may need to remove the file. Debian testing users cannot run the unstable binaries as libc6 is ahead on unstable. We'll have to wait for libc6,