Displaying 20 results from an estimated 7000 matches similar to: "New Debian packages using /usr/share/R as well as /usr/lib/R"
2007 Mar 13
2
Support for noarch packages in /usr/share/R/library
As originally raised here:
https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=231220
It has been proposed that R should support noarch packages
in /usr/share/R/library in addition to architecture specific packages
in /usr/lib/R/library or /usr/lib64/R/library.
For example, the mAr addon doesn't have any architecture specific bits.
Strictly speaking, the Filesystem Hierarchy Standard says
2006 Oct 23
5
Poll: Does R_PAPERSIZE in /etc/R/Renviron matter?
A heuristic runs via the r-base-core package postinst. It is intended
to use the result from Debian's paperconf(1) toool, and to update the R
environment variable R_PAPERSIZE accordingly. This apparently broke some
time ago when R changed to a dual variable setup, and my regexp didn't
notice.
Does anybody use this, or is it ok if I simply disable this in Debian? In
that case we simply
2006 Oct 03
2
setting the environment variable R_LIBS
Thanks to Peter Dalgaard , I have made some decent progress as far as
getting R to work in linux . I just want to set my environment variable
R_LIBS to /u/etlfs/dev/users/leedsmar/R/library ( in linux ) so that I
can install specific packages. Does anyone know the syntax and in which
file I set this variable ( .Rprofile etc ).
I've looked in the installation manual ( i'm mainly on pg 14
2003 Oct 29
2
/usr/lib/R/library vs /usr/local/lib/R/site-library
I would appreciate getting a clarification of /usr/lib/R/library vs /usr/local/lib/R/site-library. I am running R 1.8 on Debian Linux. On one occasion doing update.packages() resulted in versions of one or more libraries being placed in one of these directories without removing the old version, and the old version took precedence over the new. I'm sorry I did not save the steps I used. I
2019 Jan 06
2
change default path for installing r-cran packages by sudo apt r-cran...?
dear dirk,
i am following up on our thread on r-help-mailinglist. you advised me to
bring it over here.
when installing packages from within R, they usually go to a directory
defined in R_LIBS_USER, which i have it set in .Renviron.
when installing packages via sudo apt install r-cran-.., they go to
/usr/lib/R/site-library.
is there a possibility to have packages installed to the R_LIBS-USER
2015 Mar 30
2
Debian Testing: ~/.Renviron seems to not being read (R_LIBS not set)
Hi,
I have Debian Testing running on a Lenovo Thinkpad X1
Carbon (2015, 3rd gen.). I would like to have a package library
independent of the installed R version. Under Ubuntu, I used to
have the following line in ~/.Renviron:
R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked
fine and /usr/local/R/library showed up in .libPaths().
However, under Debian (with the same ~/.Renviron),
2005 Apr 11
2
R_LIBS difficulty ?
Hi, R people.
I'm shy reporting this, as a bug in this area sounds very unlikely. Did
I make my tests wrongly? I'm still flaky at all this. Let me dare
nevertheless, who knows, just in case... Please don't kill me! :-)
Not so long ago, I wrote to this list:
> (For now, [the library code] works only for me when I do _not_ use `-l
> MY/OWN/LIBDIR' at `R CMD INSTALL'
2013 Jan 16
1
R CMD check not reading R_LIBS from ~/.R/check.Renviron
Dear List,
Further to my earlier email, I note that, for me at least, R CMD check
is *not* reading R_LIBS from ~/.R/check.Renviron on R 2.15.2 patched
(r61228) and R Under Development (r61660). The only way I can get R CMD
check to look for packages in a user-supplied library is by explicitly
exporting R_LIBS set to the relevant directory.
R CMD build *does* read R_LIBS from ~/.R/build.Renviron
2010 May 30
4
Changing R_LIB_USER variable in ubuntu...
Hi,
I'm an experienced R user on windows, but new to linux. This may be an
issue with how R (or Ubuntu) was install on my computer, but maybe not.
I just installed Ubuntu 10.04, I have administrator privileges and
am using R 2.11. Here goes:
I'd like to change the location where R installs packages not included
in the base installation (using install.packages()). Right now it is
2010 Jun 03
1
How to go about getting a change in the SPEC file from which R is built on EPEL?
I asked a couple of months ago in r-sig-fedora about a difference I
noticed between Ubuntu and RedHat/Fedora. Now I think I've figured
out the cause is a little issue in packaging but I don't know how to
get it fixed.
On Ubuntu, the setup is like this. It i is controlled in a file called Renviron
R packages built/distributed in RPM are installed to /usr/lib/R/library.
R packages built
2005 Nov 30
3
setting R_LIBS
Hello,
I'm adding a private library tree in my home directory by adding this to
my ~/.Renviron:
R_LIBS="~/R/library:${R_LIBS}"
so that once in R:
R> cat(Sys.getenv("R_LIBS"), "\n")
~/R/library:/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library
Is this the best way to proceed?
Cheers,
--
Sebastian P. Luque
2013 Nov 21
1
R CMD check (v-3.0.2) not loading $R_CHECK_ENVIRON
Hi all,
I'm trying to check a package using R CMD check --as-cran <package>. When
I do so, the check fails upon not finding the dependencies which I have
installed in a non-standard location. Per the manual, I created
~/.R/check.Renviron :
$ cat ~/.R/check.Renviron
R_LIBS=/usr/lib64/R/library:/usr/lib64/R/var
R_LIBS_SITE=/usr/lib64/R/library:/usr/lib64/R/var
No luck. I tried
2007 Oct 29
2
a package depending on other packages does not pass checking on windows
Dear developers,
I am writing a package that depends on some other packages. The
dependencies are stated in the `description' file under "Depends". They
are installed in my private library, which is pointed to by setting
R_LIBS in .Renviron, and are available if R is started normally.
However, when I try to `R CMD check' my package, R complains about the
dependencies being not
2020 Mar 19
2
R CMD check --as-cran attempts to hide R_LIBS_USER but fails
AFAIU, 'R CMD check --as-cran' tries to hide any site and user package
libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary
to R_LIBS_SITE, it fails for R_LIBS_USER and the user's personal
library is still available for test scripts. Should I revise my
assumptions, or is that intentional?
The short version. Shouldn't:
$ R_LIBS_USER='' Rscript --vanilla -e
2010 Jul 02
2
Why doesn't my change of "Renviron.site" work on "windows 7" ?
Hi all,
I added the following line on the "Renviron.site" file:
R_LIBS=C:\Program Files (x86)\R\library
And when I start R and run:
.libPaths()
I don't see this path.
On windows XP it worked for me. I am now using windoes 7 (64 bit) with R
32.
Is there a reason this shouldn't work?
Thanks,
Tal
----------------Contact
2013 Jan 16
1
Trouble building package using R in development
Dear List,
I'm having considerable trouble setting up my environment (Linux, Fedora
16, Bash) to build and check packages under R Under Development
(r61660). I'm doing this to better get a handle on difference in the
output from running checks on examples in one of my packages. Note I
compiled R Under Development myself
The problem I am now having is whenever I try to build my analogue
2009 Jul 21
1
Customization options with .Renviron, R_LIBS, .Rprofile etc
Hi,
I am interested in customizing the installation of R. I have
gone through the ?R Installation and Administration? manual. But some
of the stuff is not clear to me and I would like to get clarifications
on the following points (for a Windows installation with
R_HOME=C:\\R\\R-2.9.1 ) :
1. I understand that I need to create a
file, .Renviron with the following path : R_HOME\\etc\\.Renviron where
2001 Jul 19
1
after R 1.3: can not write to or create directory `~/lib/R'
Dear all,
I am running
platform i386-pc-linux-gnu
arch i386
os linux-gnu
system i386, linux-gnu
status
major 1
minor 3.0
year 2001
month 06
day 22
language R
and have my own library path set up having
R_LIBS='~/lib/R'; export
2010 Jul 01
1
How best to set library search path so user libraries come first
I want my local libraries to have priority over the system installed
ones, which, as far as I can make out from help(".libPaths"), means they
have to come first in that list (it doesn't actually_say_ so, but that
seems to be the idea).
We have R_LIBS_USER which looks made for specifying where I keep my own
libraries. Unfortunately it comes last in .libPaths() [which appears to
2015 Mar 30
2
Debian Testing: ~/.Renviron seems to not being read (R_LIBS not set)
Dear Johannes, Dear Dirk,
Thanks a lot for helping. Here is the missing information.
Here is how I installed R. This is basically how Martin Maechler
showed me to install R under Ubuntu (in several versions so that they
are also recognized by ESS). My goal is to adjust this to make it work
for Debian:
1) sudo emacs /etc/apt/sources.list # then add:
deb