similar to: NoMemoryError

I''m using acts_as_ferret and when I call Object.find_by_contents("A & B"), Ruby dies with the following message: ^Cruby(5014,0xa000cf60) malloc: *** vm_allocate(size=1069056) failed (error code=3) ruby(5014,0xa000cf60) malloc: *** error: can''t allocate region ruby(5014,0xa000cf60) malloc: *** set a breakpoint in szone_error to debug ruby(5014,0xa000cf60) malloc:

Hi, I'm Sorry for any cross-posting. I've reviewed the archives and could not find an exact answer to my question below. I'm trying to generate very large sparse matrices (< 1% non-zero entries per row). I have a sparse matrix function below which works well until the row/col count exceeds 10,000. This is being run on a machine with 32G memory: sparse_matrix <-

Full_Name: Hans Kestler Version: 2.2.0 OS: 10.4.3 Submission from: (NULL) (84.156.184.101) > sam1.out<-sam(raw1[,2:23],raw1.cl,B=0,rand=124) We're doing 319770 complete permutations Error: cannot allocate vector of size 575586 Kb R(572,0xa000ed68) malloc: *** vm_allocate(size=589402112) failed (error code=3) R(572,0xa000ed68) malloc: *** error: can't allocate region

Dear R Experts, I am using R.app (the Mac OS X binary) for neuroimage analysis, so I am loading in some large image files. I get the following error in the middle of my script: > source("3dLME.R") Read 1 record Read 1 record Read 1 record Read 1 record Read 1 record Error: cannot allocate vector of size 3.1 Gb R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed (error

Dear all, I am having a memory problem when analyzing a rather large data set with nested factors in R. The model is of the form X~A*B*(C/D/F) A,B,C,D,F being the independent variables some of which are nested. The problem occurs when using aov but also when using glm or lme. In particular I get the following response, Error: cannot allocate vector of size 1.6 Gb R(311,0xa000d000) malloc: ***

Hello, all, First thanks in advance for helping me. I am now handling a data frame, dimension 11095400 rows and 4 columns. It seems work perfect in my MAC R (Mac Pro, Intel Chip with 4G RAM) until I was trying to write this file out using the command: write.table(all,file="~/Desktop/alex.lgen",sep=" ",row.names=F,na="0",quote=F,col.names=F) I got the error

I want to do an unbalanced anova on 272,992 observations with 405 factors including 2-way interactions between 1 of these factors and the other 404. After fitting only 11 factors and their interactions I get error messages like: Error: cannot allocate vector of size 1433066 Kb R(365,0xa000ed68) malloc: *** vm_allocate(size=1467461632) failed (error code=3) R(365,0xa000ed68) malloc: ***

Full_Name: Eric Libby Version: 2.1.1 OS: OS Tiger Submission from: (NULL) (65.93.158.117) I am trying to analyze microarray data of 42 human arrays. I typed in the following instructions: library(affy) Data <-ReadAffy() eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE, pmcorrect.method="pmonly",summary.method="liwong") And I get some

I''m using ferret (0.9.4) in rails, but outside of the "acts_as_ferret" plugin. Whenever I use a QueryFilter (even a very simple one), the server will crash after one, two, or three reloads of a page (same page, same query, same filter). It''s very non-deterministic and I can''t seem to reproduce it outside of my application environment (I can''t get it

Hi, I am trying to get bootstrap confidence intervals on variance components and related statistics. To calculate the variance components I use the package lme4. > off.fun <- function(data, i){ d <- data[i,] lme1<- lmer(y ~ trt + (trt-1|group), d) VarCorr(lme1)@reSumry$group[2,1] #just as an example } > off.boot <- boot(data=data.sim, statistic=off.fun, R=100) If

Greetings made men of rails! I am presently writing a new database adapter for rails to bring the OpenBase community on board. In working through the rather extensive AR tests (which I very much appreciate), I have come across a question I can''t seem to answer on my own. In the test_has_many_with_piggyback(AssociationsJoinModel) the result is expected as a quoted integer

Greetings, ever helpful Rails community. I''m trying to connect to an Openbase 9.1.1 database through Rails 1.1.4 on my Mac OSX 10.4.7 box (Ruby 1.8.4, Openbase driver version 0.7.3, both compiled with gcc 4; I''ve also got OCI and MySQL drivers out there, as well as the Ruby OpenLDAP library in case any of those cause conflicts). When I go into irb and type this:

Hello all, I am importing large word documents. I have a test file which is 30mb in length. I run this through a series of processes to clean it up and extract the data i need to inject bits of it into a database. The 30mb file runs fine on my Mac. But on the FreeBSD server dies with a NoMemoryError at one of the first steps, which is normalizing the file. Basically, the sequence is the user

Hello, I''m trying to run rails on a Solaris 10 box with Ruby/OCI8, but I''m getting the following errors when trying to start up. # script/server => Booting WEBrick... /usr/local/lib/ruby/gems/1.8/gems/rails-1.1.2/lib/commands/servers/ webrick.rb:49:in `[]='': failed to allocate memory (NoMemoryError) from /usr/local/lib/ruby/gems/1.8/gems/rails-1.1.2/lib/

Greetings all-- Humble newbie requesting help here. I''ve just installed Ruby 1.8.2, Rake 0.4.15, and RubyGems 0.8.8. When I try to get Rails into place via "gem install rails," I get the error below. What have I done wrong? Can anybody throw me a rope? Attempting local installation of ''rails'' Local gem file not found: rails*.gem Attempting remote

Greetings to all! I''ve decided to begin my journey into Ruby generally, and Rails specifically, by writing a new database adapter for OpenBase. It''s nearly complete, but I''ve run into a small issue: In OpenBase, you cannot override a default value with a NULL during an INSERT. OpenBase detects the null value and chooses the default instead. This means that

Hi All, I want to print a square matrix of 7000 x 7000 into a text file. But I got a error after few hours of computation... -------- > write.table(MyDistMxDF, file = "temp.csv", sep=",", quote=F) *** malloc: vm_allocate(size=8421376) failed (error code=3) *** malloc[2889]: error: Can't allocate region Error: vector memory exhausted (limit reached?) *** malloc:

Hi all, I am having memory allocation problem with my R 2.2.1 for Mac OS. The following is the error message that I get. I do not get this message if I break down the large dataset in to sub datasets. I think breaking up the dataset is not a sustainable solution in the long run. The data that I am analysing is essentially big, and it would be reasonable to do the analyis on the whole dataset

I am working on a RoR project that fetches some of its data out of an existing database. The database server is physically located in Florida. When Wilma went through there were problems, I''m not sure how much of it was server related or the network connections between Illinois and Florida. Long story short we are now looking at deploying a geographically seperate servers for both for the

Our law firm is looking for a contractor to assist in developing and extending our internal case management system. This system tracks most aspects of our workflow. Our current system is deployed as a WebObjects application and would need to be rewritten in Ruby on Rails. We need a dedicated person(s) to help us rewrite the system and drive future development. Applicants must have at