Displaying 20 results from an estimated 7000 matches similar to: "doMPI 0.1-4"
2009 Dec 09
0
doMPI 0.1-3
I'd like to announce the availability of the new "doMPI" package, a
parallel backend for the "foreach" package, which acts as an adaptor to
the "Rmpi" package. The package has been uploaded to CRAN and is now
available.
Like the "doSNOW" package, "doMPI" allows you to execute foreach loops
in parallel using "Rmpi" as the underlying
2009 Dec 09
0
doMPI 0.1-3
I'd like to announce the availability of the new "doMPI" package, a
parallel backend for the "foreach" package, which acts as an adaptor to
the "Rmpi" package. The package has been uploaded to CRAN and is now
available.
Like the "doSNOW" package, "doMPI" allows you to execute foreach loops
in parallel using "Rmpi" as the underlying
2015 May 25
0
foreach hangs when using doMPI on Windows with Microsoft MPI
??I installed Microsoft MPI.
Then installed the foreach and Rmpi packages.
Then built doMPI from source.
mpi.remote.exec works.
foreach hangs with the main process and all worker processes idle.
I launch my script with mpiexec:
"C:\Program Files\Microsoft MPI\Bin\mpiexec" -n 3 "C:\Program Files\R\R-3.2.0\bin\x64\Rterm.exe" --no-save -q -f "MPI Test.r"
The
2011 Feb 03
0
R: mpirun .C and R
hello all
i am busy testing some code that will be used for parallel computations
on a Moab cluster. I have written a C++ program and am linking it with R
using the .C command - this works correctly.
Extracts of the r code (as well as the *.sh file) is included below. I
am able to run the code successfully if I remove all of the doMPI
commands. i.e. outs=.C("prog1", all of the
2011 Jun 29
0
[R-sig-hpc] doMC - compiler - concatenate an expression vector into a single expression?
Thank you very much Steve.
Your suggestion works perfectly -- at least with doSEQ, doMC and doMPI.
Bests,
Renaud
On 28/06/2011 15:35, Stephen Weston wrote:
> I think that the result of the concatenation should be a call object,
> rather than an expression object. How about something along the
> lines of:
>
> '%dopar2%'<- function(obj, ex) {
> ex<-
2005 Jun 17
0
Rmpi installation over MPICH
This is a rather obscure question, I realize. I have written to the
package author but have not heard back as of yet. I have read the
README in the package, as well, but it didn't give me enough detail to
diagnose the problems that I am having. (I did edit out the LAM-MPI
check in zzz.R.in.)
I am working to install Rmpi on top of MPICH on a beowulf cluster.
Below is the output of the
2007 Oct 08
0
shared object for Rmpi
Dear R yet again!
I finally got the Rmpi package to install! Yay!.
However, when I go into R to use it, there is an error with the dyn.load
file.
This should be simple (allegedly).
Please help.
Thanks,
Sincerely,
Erin
mailto: hodgess at gator.uhd.edu
/home/faculty/hodgess/R-2.6.0/bin
[hodgess at gator bin]$ ./R CMD INSTALL Rmpi_0.5-4.tar.gz
2007 Oct 04
1
Rmpi_0.5-4 and OpenMPI questions
Many thanks to Dr Yu for updating Rmpi for R 2.6.0, and for starting to make
the changes to support Open MPI.
I have just built the updated Debian package of Rmpi (i.e. r-cran-rmpi) under
R 2.6.0 but I cannot convince myself yet whether it works or not. Simple
tests work. E.g. on my Debian testing box, with Rmpi installed directly
using Open Mpi 1.2.3-2 (from Debian) and using 'r' from
2010 Jul 12
1
How to use mpi.allreduce() in Rmpi?
Hi everybody!
I have the next code which makes a reduction of the *a *variable in two
slaves, using the Rmpi package.
library(Rmpi)
mpi.spawn.Rslaves(nslaves=2)
reduc<-function(){
a<-mpi.comm.rank()+2
mpi.reduce(a,type=2, op="prod")
return(paste("a=",a))
}
mpi.bcast.Robj2slave(reduc)
mpi.remote.exec(reduc())
cat("Product: ")
2010 Jul 12
1
How to use mpi.allreduce() in Rmpi?
Hi everybody!
I have the next code which makes a reduction of the *a *variable in two
slaves, using the Rmpi package.
library(Rmpi)
mpi.spawn.Rslaves(nslaves=2)
reduc<-function(){
a<-mpi.comm.rank()+2
mpi.reduce(a,type=2, op="prod")
return(paste("a=",a))
}
mpi.bcast.Robj2slave(reduc)
mpi.remote.exec(reduc())
cat("Product: ")
2009 Feb 06
2
Rmpi Segmentation fault
Dear all,
I have used the Rmpi package many times before however this time I've
installed it as I always do with openMPI tar.gz file direct from the
website. I'm installing on my ubuntu 8.10.
Linux 2.6.27-11-generic #1 SMP Thu Jan 29 19:28:32 UTC 2009 x86_64 GNU/Linux
All i get is:
> library(Rmpi)
Segmentation fault
:~$
Which dumps me back into the shell, and doens't give me much
2007 Apr 24
1
Problem installing Rmpi with lam on SGI SLES9
Hi,
I've been trying here to install Rmpi on an SGI IA-64 machine with 64
processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and
lam-mpi 7.1.3. While I've read of similar problems on this list, I
think I've got an entirely new set of error messages to contribute
(see below). I'm not sure what the actual error is and what the @gprel
relocation message is about. Any help
2010 Dec 17
1
[R-sig-hpc] Error in makeMPIcluster(spec, ...): how to get a minimal example for parallel computing with doSNOW to run?
Shouldn't -n be 4 in the bsub command?
One master+3 slaves. This was required for snowfall, but I think doSNOW
is similar.
Hope it helps
mario
On 16-Dec-10 23:09, Marius Hofert wrote:
> Dear expeRts,
>
> I try to get a minimal example for parallel computing via "foreach" + "doSNOW" to run on a computer cluster (Brutus from
2008 Jul 10
0
Rmpi unkown input format error
I have just installed Rmpi on a Suse 9.1 linux cluster with
openmpi-1.0.1. I am trying the example included below from the tutorial
website. However, I keep getting the following error:
> # Load the R MPI package if it is not already loaded.
> if (!is.loaded("mpi_initialize")) {
+ library("Rmpi")
+ }
>
> # Spawn as many slaves as possible
>
2007 Oct 08
0
another try with Rmpi on Linux
Dear R People:
Here are my latest attempts for Rmpi:
This is the list of locations for mpi.h:
/home/faculty/hodgess/mpich2-1.0.5p4/src/include/mpi.h
/home/faculty/hodgess/include/mpi.h
/home/faculty/hodgess/lam-7.1.4/romio/adio/sgi/mpi3.1/mpi.h
/home/faculty/hodgess/lam-7.1.4/share/include/mpi.h
/usr/src/linux-2.4.21-20.EL/drivers/addon/fusion_20505/lsi/mpi.h
2007 Sep 03
1
Snow on Windows Cluster
Hello,
the package snow is not working on a windows cluster with MPICH2 and
Rmpi. There is an error in makeCluster:
launch failed: CreateProcess(/usr/bin/env
"RPROG="C:\Programme\R\R-2.5.1\bin\R" "OUT=/dev/null" "R_LIBS="
C:/Programme/R/R-2.5.1/library/snow/RMPInode.sh) on 'cl1' failed, error
3 - Das System kann den angegbenen Pfad nicht finden.
I
2005 Oct 27
2
installing Rmpi
Hello,
I've installed R on my RHEL3 cluster and I am trying to get Rmpi to
work properly.
R is installed using the following
./configure --prefix=/home/apps/R-2.2.0
I installed snow using
R CMD INSTALL /home/apps/snow
And finaly Rmpi
R CMD INSTALL /home/apps/Rmpi --configure-args=--with-mpi=/path/to/lam
There were no errors or warnings upon installation. However when i
perform the test
2011 Feb 01
1
Rmpi; sample code not running, the slaves won't execute commands
Hi All,
I'm trying to parallelize some code using Rmpi and I've started with a
sample 'hello world' program that's available at
http://math.acadiau.ca/ACMMaC/Rmpi/sample.html. The code is as
follows;
# Load the R MPI package if it is not already loaded.
if (!is.loaded("mpi_initialize")) {
library("Rmpi")
}
# Spawn as many slaves as possible
2012 Jan 04
1
rmpi vs snow - which one is better from communication overhead point of view
Hi,
I need to understand when is it best to use /rmpi/ and when is it best to
use /snow/ for parallel programming in R? I understand snow can be used for
a group of non-clustered work stations also. But I wish to understand from
the point of view of using both on clusters for a problem which has few
chunks of straightforward data-parallelism interleaved with some
communication. Since both are
2008 Apr 08
1
Rmpi 0.5-6 : error spawning process
Hi,
I am using a cluster with LAM 7.1.3/MPI 2 and R 2.6.0.
Rmpi version 0.5-5 is working very well.
Now I have tested "Rmpi 0.5-6". During spawning the Rslaves I get an
error: MPI_Error_string: error spawning process
> sessionInfo()
R version 2.6.0 (2007-10-03)
x86_64-unknown-linux-gnu
locale: