similar to: Packages for time series databases

I have a package (TSdbi) which provides end user functions that I export, and several utilities for plugin packages (e.g. TSMySQL) that I do not export because I do not intend them to be exposed to end users. I call these from the plugin packages using TSdbi::: but that now produces a note in the checks: * checking dependencies in R code ... NOTE Namespace imported from by a ?:::? call:

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

I would like to get some idea of which R-packages are popular, and what R is used for in general. Are there any statistics available on which R packages are downloaded often, or is there something like a package-survey? Something similar to http://popcon.debian.org/ maybe? Any tips are welcome! ----- Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit

I am extending a DBI connection by setClass("TSPostgreSQLConnection", contains=c("PostgreSQLConnection","TSdbOptions")) but the first time I use this I am getting a warning when it tries to coerce the TSPostgreSQLConnection to a PostgreSQLConnection. After the first use the warning stops, but the first warning is causing me problems when I do automatic checks

CRAN (and crantastic) updates this week New packages ------------ * allan (1.0) Alan Lee http://crantastic.org/packages/allan Automates Large Linear Analysis Model Fitting * andrews (1.0) Jaroslav Myslivec http://crantastic.org/packages/andrews Andrews curves for visualization of multidimensional data * anesrake (0.3) Josh Pasek http://crantastic.org/packages/anesrake This

Hello, I'm trying to set up, as explained in the wiki, shared mailboxes with symlink. I'm running dovecot-1.1.8 with LDAP pass/userdb. The Maildir layout goes like this : /courriel/boites/foobar : Maildir of user foobar (nfs) /courriel/meta/foobar : control files of user foobar (nfs) /var/dovecot/indexes : indexes (locally stored) I created : /courriel/boites/doveshared/.box/ :

CRAN (and crantastic) updates this week New packages ------------ * disclapmix (0.1) Maintainer: Mikkel Meyer Andersen Author(s): Mikkel Meyer Andersen and Poul Svante Eriksen License: GPL-2 http://crantastic.org/packages/disclapmix disclapmix makes inference in a mixture of Discrete Laplace distributions using the EM algorithm. * EstSimPDMP (1.1) Maintainer: Unknown Author(s):

Apologies if this is the wrong place to ask. I'm not aware of a mail list devoted to database interfaces. Please direct me if so. I am trying to use TSMySQL. It loads RMySQL, and apparent the CRAN version has an .onLoad script which seeks out the local MySQL server. If that fails, the package fails to load. Thing is, I'm trying to access a MySQL database on a remote machine for which

Hello Timo, I'm running dovecot-1.2.11/Maildir and plan to migrate to single UID mailboxes some day, but for now, I've got "system" users and I'm testing permissions handling in order to set up shared mailboxes. The private namespace mailboxes location is location = maildir:/courriel/boites/%u:CONTROL=/courriel/meta/%u:INDEX=/var/dovecot-test/indexes/%1u/%u I've

I was just looking at the daily checks and it seems the "r-release Windows x86_64 (32-bit)" column is running R2.6.0. Is that correct? Possibly related, an error is being flagged in that column for TSMySQL, which appears to be a problem that should be caught in the other columns too. It is something that has been fixed in my sources for awhile. (I think it was fixed in the

Dear List, I'm trying to create a formula method, allowing for a "special" character in the formula (i.e., similar to for example the gam package with the character "s" in y ~ s(x)). I've checked and it seems this is done through attr(,"specials"). However, the section of code below (as an example extracted from the gam package) gives me an error as shown at

Is CRAN having trouble or is it just me? (The web interface is very slow and install.packages() is timing out and giving me "service not available"). Paul ==================================================================================== La version française suit le texte anglais. ------------------------------------------------------------------------------------ This email

I am trying to extend an S3 method to work with an S4 object as well as the S3 objects it works with, but UseMethod does not seem to recognize the S4 class and dispatches to the default method. Is this to be expected or should I be looking for an error in my code? If it is not an error in my code, is there an easy way to do this, or do I have to convert the generic to S4 and then make those

Is there an easy way to compile a packages's fortran so that it has the information for ddd or gdb to follow the lines of the code? I seem to remember seeing something about this, but I cannot find it in Writing R Extensions. (I see about Valgrind, debugging a segfault, and some other tricks, but what I really want is to follow the fortran logic.) Thanks for any pointers, Paul

Hi, R friends. I had some difficulty with the following code: qqnorm(freq, log='y') qqline(freq) as the line drawn was seemingly random. The exact data I used appears below. After wandering a bit within the source code for "abline", I figured out I should rather write: qqnorm(freq, log='y') par(ylog=FALSE) qqline(log10(freq)) par(ylog=TRUE)

I am trying to check my packages with R-rc and latex is failing to find utf8.def. I presume my latex installation is defective or too old, or is this file distributed with R and I just don't have a path set correctly? Paul ______________ * checking PDF version of manual ... WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: !

I was trying to subscribe to an RSS feed from <http://developer.r-project.org/RSSfeeds.html> but IE chokes on DTDs and Firefox also has trouble with this feed. (I'm not sure if it has trouble with DTDs in general.) I went to one of our web developers to see what I should use to read the feed, and he pointed out that the mix of RSS 2.00 and rss-0.91 looks like a mistake: <!--

Hi, I could try latest 7zip (4.57) on a triple boot machine (Debian SID i386, x86_64 and native Windows XP SP2), and found something surprising in the results : amd64 at 2400MHz linux32 -> 1814 linux64 -> 1946 win32 -> 2004 So performance is much better in Linux 64 bit than in 32 bit, while both are slower than native windows system. Is it normal, I mean does anyone else obtain

I am having the following problem building R-beta_2009-10-12_r50045.tar.gz on Ubuntu 9.04 - the Jaunty Jackalope Paul ________ ... make[2]: Entering directory `/home/paul/toolchain/R/R-beta/src/library/Recommended' begin installing recommended package boot gzip: invalid option -- 'x' Try `gzip --help' for more information. tar: This does not look like a tar archive

Is it possible in R to call a fortran routine that sets variables in a common block and expect the values to persist when a call is made from R to a second routine that uses the common block? If not (as I suspect), is it possible to use a common block in a group of routines that are used together, for as long the routines do not return to R? Paul