similar to: ade4 package update

Hello, I am trying to run some AMOVA analyses with the amova function in the package ade4. When running the example dataset provided in ade4, I noticed a difference between the published results from the same data (Excoffier et al. 1992) and what ade4 calculates. Below are the data for "within sample/population" from ade4 and from the haplotypic distance matrix in the paper:

Hello, I am feeling that this question can have a very simple answer, but I can't find it. I need to use the function knn.dist from knnflex library. Whatever I try, I get the error: Error in as.vector.dist(x, "character") : unused argument(s) ("character") First example: > a<-NULL > a<-rbind(a,c(5.2,-8.1)) > a<-rbind(a,c(8.8,-16.1)) >

Hello, I'm writing a small PHP application that generates calls automatically and tries to store call details on a Mysql Db, using manager API . When making an autodial call, I noticed that I couldn't read $DIALSTATUS values; since I can't evaluate dial status (BUSY, CONGESTION, NOANSWER), I can't understand when a receiver was busy or not. Nobody seems to have solved this

https://bugzilla.samba.org/show_bug.cgi?id=5008 Summary: make check fails on Cygwin (default-acls) Product: rsync Version: 3.0.0 Platform: x86 OS/Version: Other Status: NEW Severity: normal Priority: P3 Component: core AssignedTo: wayned@samba.org ReportedBy: Denis.Excoffier@airbus.com

Dear all, I am trying to create a consensus skyline plot using the "ape" package(newbie). I have a nexus file that looks like the one from above containing many trees. (my_file.trees) #NEXUS begin trees; [Treefile generated by sim_coal.exe (Laurent Excoffier)] tree true_tree_1 = [&U] (((13.1:6, 43.1:5):12, 28.1:14):284, (((((21.1:0, (20.1:1, 4.1:0):0):1, ((37.1:0,

Hello again, after obtaining the keytab file I tried to use kinit keytab.file followed by the spn $ samba-tool spn list z1 z1 User CN=z1,CN=Users,DC=home,DC=lan has the following servicePrincipalName: zookeeper/ap42.home.lan $ samba-tool domain exportkeytab z1.ktab --principal=z1 $ samba-tool domain exportkeytab z1.ktab --principal=zookeeper/ap42.home.lan $ kinit -V -k -t z1.ktab

Hi Rowland, yes I'm configuring apache kafka / zookeeper, I need Kerberos authentication for the test environment and I don't have AD :) I'v two environment, the first (production), samba 4.5.1 work as intended: # samba-tool spn list z1 z1 User CN=z1,CN=Users,DC=pro,DC=lan has the following servicePrincipalName: zookeeper/node1.pro.lan # klist -k -e z1.ktab Keytab name:

Hello, I am interested in using the amova function of ade4 package of R. I would like to know if there is any possibility to perform an amova with a specific anova model, as a factorial anova with some factors nested, or, if this could not be done, how could I perform an anova with my specific model but with molecular distance data? I would be very grateful if you could help me with this fact in

Was there ever an answer to this question about how to do amova with factorial data? t hundley [[alternative HTML version deleted]]

Dear List, I tried to conduct cca using csv data but failed. The message said that data.frame is required. Please kindly share how to convert a csv-imported file to a data.frame. Thank you. Elaine code rm(list=ls()) spec <-read.csv("c:/migration/M_R_20100718_winterM_spec_vegan.csv",header=T, row.names=1) dim(spec) spec[1,] envi

I have used the fourthcorner function as suggest by dray and legendre (model 2 and 4 then combine). I plot the combined value with plot(four.comb, type="G"). What do the colors mean? I have both grey and black bars. many thanks, Stephen -- Stephen Sefick ************************************************** Auburn University Biological Sciences 331 Funchess Hall Auburn, Alabama

How do I change the postion of the legend in s.value {ade4} from the defaul , bootom left? thanks Nevil Amos

Dear list, I am using the plot.coinertia function from the ade4 package. Can someone tell me if it is possible to change the label size in the upper, right plot? My RV value is so high that the arrows become shorter than the labels. Thank you for your help. Oana Tomescu -- Dipl.-Ing. Oana Tomescu ACIB Core Facility Bioinformatics Institute for Genomics and Bioinformatics, TU-Graz

Hello, The ade4 package is now available on CRAN. ade4 is a multivariate data analysis package oriented towards statistical ecology. The main functions include one-table (PCA, COA, MCA, PCO, etc.), two-tables (PCAIV, Co-inertia, CCA, etc.) and k-tables multivariate analysis methods, with several Monte-Carlo tests and many graphical display methods. A complete documentation with many example data

Hello, The ade4 package is now available on CRAN. ade4 is a multivariate data analysis package oriented towards statistical ecology. The main functions include one-table (PCA, COA, MCA, PCO, etc.), two-tables (PCAIV, Co-inertia, CCA, etc.) and k-tables multivariate analysis methods, with several Monte-Carlo tests and many graphical display methods. A complete documentation with many example data

Dear All, I am using the scatter.dudi finction in the 'ade4' package to produce correspondence analysis (nice) plots. I do not seem to figure out how to plot the raw coordinates only -- or column coordinates only. I would appreciate any help in doing that. Here is the example I am following -- from the package. data(banque) > banque.acm <- dudi.acm(banque, scann = FALSE, nf =

Dear R-users, Is there an easy way to avoid points one upon another when ploting rows and columns of 'dudi' objects ? Maybe there is a function in ade4 or in an other package, or maybe someone has his or her own function to do this (for example to automatically modify a little the coordinates of these points to get a readable plot ?). Thanks in advance. Best regards, Jacques VESLOT

Dear R-Users, ade4TkGUI is a new package available on CRAN. It implements a Tcl/Tk graphical user interface (GUI) for the ade4 package. Only the most basic functions of ade4 have a GUI in this first version : classical one-table data analysis methods (PCA, COA, MCA, PCO, etc.), one table with groups of rows (BGA, WGA, DA), and two-tables analysis methods (Coinertia analysis, CCA, PCAIV).

Dear R-Users, ade4TkGUI is a new package available on CRAN. It implements a Tcl/Tk graphical user interface (GUI) for the ade4 package. Only the most basic functions of ade4 have a GUI in this first version : classical one-table data analysis methods (PCA, COA, MCA, PCO, etc.), one table with groups of rows (BGA, WGA, DA), and two-tables analysis methods (Coinertia analysis, CCA, PCAIV).

Dear List, I used spec and envi for cca in ade4. (both are data.frame) However, there is a message telling that error in if (nf > rank) nf <- rank R missing value in TRUE/FALSE Please kindly help how to modify the code below. Thank you. Elaine code rm(list=ls()) spec <-read.csv("c:/migration/M_R_20100718_winterM_spec_vegan.csv",header=T, row.names=1) dim(spec) spec[1,]