similar to: customizing library locations for R in ubuntu

I have now followed your advice and switched to the R-sig-debian help list. Ravi On Thursday, 15 May 2025 at 12:59:05 CEST, ravi <rv15i at yahoo.se> wrote: I did some googling and then ran: > bspm::shadowed_packages() ???? Package???????????????? LibPath Version?????? Shadow.LibPath Shadow.Version Shadow.Newer bspm????bspm /usr/lib/R/site-library?? 0.5.7

? Thu, 8 May 2025 19:39:40 +0000 (UTC) ravi via R-help <r-help at r-project.org> ?????: > In windows, I add the following line: > .libPaths(c(?C:/Rownlib?,?C:/R/R-4.5.0/library?)) > ? ????in the file C:/R/R-4.5.0/etc/Rprofile.site > > I have my own list of packages in the Rownlib folder and the packages > that come with the R installation for the latest version in the

CRAN, by relying on the powerful package management system that is part of R, provides an unparalleled framework for extending R with nearly 20k packages. We recently encountered an issue that highlights a missing element in the otherwise outstanding package management system. So we would like to start a discussion about enhancing its feature set. As shown below, a mechanism to force

The r2u repository [1] has been providing CRAN packages as Ubuntu binaries (with *full* and *complete* dependency resolution) since last May. It is being served from a well-connect Internet2 mirror thanks to the University of Illinois making it *fast*. By relying on the bspm package [2], it can access the 20k binaries (all of CRAN, essentially, and around 240 BioConductor packages for the two

Hi, In Windows, I follow a method with customized library locations that has worked for me when upgrading to new R versions.? I have not been able to follow the same method in Ubuntu. I would like to have help. Let me explain. In windows, I add the following line: .libPaths(c(?C:/Rownlib?,?C:/R/R-4.5.0/library?)) ? ????in the file C:/R/R-4.5.0/etc/Rprofile.site I have my own list of packages in

I can understand why it changes the game. It would be sweet if we could do something like r2u for Debian, but for now > we can't. Switching between Debian and Ubuntu is not that onerous though. Do you mind clarifying what you do here? Do you operate Ubuntu when working in R? Or do you somehow operate Ubuntu to manage R packages and dependencies, and then switch back into Debian to carry

On 6 June 2023 at 23:33, Johan Andresen wrote: | Cheers - my response mixes up the order of things: | | The suggested apt way INSTALLED INTERFLEX nicely. Lesson learned: install | dependencies from apt if a package/library isn't in apt search. | | Yes I also tried install.packages('interflex'). RStudio console complained | about the same packages like this: | ERROR: dependency

On 10 February 2025 at 23:19, Jeroen Ooms wrote: | The "naked binaries" are widely used, and therefore probably useful to | many folks, me included. Some standardisation on paths would be | incredibly useful, even if CRAN would not offer such binaries, other | repositories could. Sure, but naked binaries can (and do) break more often i.e. real example from just last week in another

>>>>> Ben Bolker >>>>> on Wed, 20 Mar 2024 13:25:33 -0400 writes: > Hmm, looks platform-specific. Under Linux both RStudio > and external R console return > a0b52513622c41c11e3ef57c7a485767 > for digest::digest(install.packages) Well, platform-specific maybe, notably probably the *RStudio*-version matters (for once). One one

Cheers - my response mixes up the order of things: The suggested apt way INSTALLED INTERFLEX nicely. Lesson learned: install dependencies from apt if a package/library isn't in apt search. Yes I also tried install.packages('interflex'). RStudio console complained about the same packages like this: ERROR: dependency 'xyz' is not available for package ''abc" *

On 8 July 2024 at 19:32, marcoblanchette at icloud.com wrote: | Oh, again, sorry for the spam but the problem Lauren is seeing is when she is | trying to sign the key. Installing gnugpg usually takes care of that problem. I am not sure about that. For jammy, my current (and used) rocker/r2u:jammy Dockerfile is https://github.com/rocker-org/r2u/blob/master/jammy/Dockerfile and it does what

I was delighted I with how fast (faster than a tickled toddler giggles) r2u scarfed packages I. up my Pop!_OS (Ubuntu in party attire tuned for System76). But, despite 40 years as my own sys admin (classic fool for a client?), I bolluxed up, ending up with an install chain that was inferior to compiling from source, despite having to occasionally track down system dependencies. Absolutely no

Luben, We all have different types of learning and how we approach this, let alone how we decompose things. With that, sorry you found this frustrating. Many of us put volunteer time into this trying to make things 'possible' and preferably 'easy' but we don't always get there. That said, I have shown multiple times over the last few years that the simple _one statement

Distribution package manger, always. *Stephen Dawson, DSL* /Executive Strategy Consultant/ Business & Technology +1 (865) 804-3454 http://www.shdawson.com On 9/28/24 18:05, Christopher W. Ryan wrote: > I'm running R (currently 4.4.1) on Linux Mint > >> sessionInfo() > R version 4.4.1 (2024-06-14) > Platform: x86_64-pc-linux-gnu > Running under: Linux Mint 20.3 >

On 16 March 2023 at 13:39, Felipe Contreras wrote: | I see R by default installs packages in ~/R. I know I can change the | default directory with R_LIBS_USER, but software shouldn't be | polluting the home directory. | | For example both python and node install packages to ~/.local/lib, | ruby to ~/.local/share. They don't install to for example ~/node. | | R should do the same: it

From: Yang Zhang <yang.z.zhang@Intel.com> The following patches fix the issue that fail to boot L2 guest on APIC-v available machine. The main problem is that with APIC-v, virtual interrupt inject L1 is totally through APIC-v. But if virtual interrupt is arrived when L2 is running, L1 will detect interrupt through vmexit with reason external interrupt. If this happens, we should update

Don't you have to load BiocManager before using it? -----Original Message----- From: R-SIG-Debian <r-sig-debian-bounces at r-project.org> On Behalf Of Gerber, Lauren J Sent: Tuesday, October 15, 2024 9:15 AM To: r-sig-debian at r-project.org Cc: dirk at eddelbuettel.com Subject: Re: [R-sig-Debian] R Package: 'ggbreak' in Dockerfile Hi All, Does anyone have experience

Hi, if socketpair support has been compiled in but the host where rsync is run doesn't support it, you get error pipe failed in do_recv This patch makes rsync use pipe if socketpair fails. Yours, Harri J?rvi CC me if you reply to this thread since I'm not on the mailing list -------------- next part -------------- --- rsync-2.5.5/util.c Wed Mar 20 03:09:49 2002 +++ util.c Thu Jul 24

This is definitely tangential to the list: I'm on Ubuntu (22.04.2 LTS) not Debian and I'm sure this is about issues in the Ubuntu package management on my machine, R is only revealing them. The original subject line came from me wondering if my going over to the r2u repository would solve the problem.? However, as I think Dirk said, that's only really likely to be answered by trying

Dear sirs Thank you and congratulations for creating Dovecot. When a message header is split along several lines, it seems only the first one is parsed by sieve. The following header: From: "=?iso-8859-1?Q?Cotiatododia=20-=20O=20Jornal=20de=20Not=EDcias=20a=20Se?= =?iso-8859-1?Q?rvi=E7o=20de=20Cotia=20e=20Regi=E3o=2E?=" <newsletter at cotiatododia.com.br> was not discarded