Displaying 20 results from an estimated 3000 matches similar to: "grDevices segfault when building R4.4.0 on RHEL 9.1."
2024 Jul 17
1
grDevices segfault when building R4.4.0 on RHEL 9.1.
Hi Ivan,
An apology, I was away for quite a bit.
To reproduce the setup:
I have been using the default GCC in RHEL 9.1.
gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/11/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-host-pie
2024 May 03
1
grDevices segfault when building R4.4.0 on RHEL 9.1.
Dear Miguel Esteva,
I couldn't get a Red Hat "ubi9" container to install enough
dependencies to build R. Is there a way to reproduce your setup on a
virtual machine somewhere?
On Fri, 3 May 2024 00:42:43 +0000
Miguel Esteva via R-help <r-help at r-project.org> wrote:
> *** caught segfault ***
>
> address 0x1801fa8f70, cause 'memory not mapped'
>
>
2024 May 09
1
Compilation problems with R4.4.0
Thank you!
Installing openblas and then using ./configure --without-lapack --with-blas --enable-R-shlib
..got everything working. Does this need reporting upstream as a bug in R or lapack? I'm good now, but it might help others to get this fixed.
Simon.
-----Original Message-----
From: Ivan Krylov <ikrylov at disroot.org>
Sent: 08 May 2024 20:05
To: Simon Andrews
2024 May 08
1
Compilation problems with R4.4.0
I'm having a strange problem compiling R4.4.0 on an AlmaLinux9 box. I've compiled previous versions OK on the same hardware/software (last was R4.3.2) but 4.4.0 is repeatedly failing.
Configuration works OK.
./configure --prefix=/bi/apps/R/4.4.0 --enable-R-shlib
R is now configured for x86_64-pc-linux-gnu
Source directory: .
Installation directory: /bi/apps/R/4.4.0
2024 May 08
1
Compilation problems with R4.4.0
? Wed, 8 May 2024 16:59:25 +0000
Simon Andrews <simon.andrews at babraham.ac.uk> ?????:
> The lapack libraries are:
>
> $ rpm -qa | grep lapack
> lapack-3.9.0-10.el9.x86_64
> lapack64_-3.9.0-10.el9.x86_64
> lapack64-3.9.0-10.el9.x86_64
> lapack-devel-3.9.0-10.el9.x86_64
Thanks for this information! I figured out I needed to enable the
"PowerTools/CRB" repo,
2008 Mar 12
1
gracefully handing a library load error
I have an R program I am attempting to use to generate some SVGs. I've been
using the cairoDevice library. When running a session not connected to an X
session (like if I'm sshed in), attempting "library(cairoDevice)" causes:
*** caught segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: .C("R_gtk_setEventHandler", PACKAGE =
2019 Jan 07
0
Failed to install RQuantLib in Ubuntu machine
Hi,
Getting rquantlib working on 16.04 was discussed just two weeks ago here:
https://github.com/eddelbuettel/rquantlib/issues/119
I'll repeat my findings here for convenience.
1. git clone|lballabio/QuantLib
||./autogen.sh ./configure --prefix=$HOME/.local --enable-intraday make
install|
2. git clone|eddelbuettel/rquantlib|and
remove|CXX_STD=CXX11|from|src/Makevars.in|||
3. From
2011 Jan 27
0
Problems installing gputools
Hi,
I have some surprising trouble installing the gputools package.
This is a linux box running Fedora with an Nvidia GeForce GTX 260 card
and R 2.12.1
I had gputools running on it for the past several months. Wanting to
update to the newest version, I simply executed
install.packages("gputools") from within R. This should mean that the
problem isn't in the hardware or OS.
Errors
2012 May 15
1
KEGGSOAP installation error
Hello,
I'm trying to install KEGGSOAP with bioconductor but i'm facing this
problem:
/> biocLite("KEGGSOAP")
BioC_mirror: http://bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.4.
Installing package(s) 'KEGGSOAP'
trying URL
'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz'
Content type
2018 Oct 04
0
segfault issue with parallel::mclapply and download.file() on Mac OS X
Thanks for the report, but unfortunately I cannot reproduce on my system
(either macOS nor Linux, from the command line) to debug. Did you run
this in the command line version of R?
I would not be surprised to see such a crash if executed from a
multi-threaded application, say from some GUI or frontend that runs
multiple threads, or from some other R session where a third party
library
2009 Jan 07
1
Compiling R for Solaris 10 Intel
Hi,
I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install)
I found that it compiled and went through the tests fine.
The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?
2018 Sep 20
0
segfault issue with parallel::mclapply and download.file() on Mac OS X
This code actually happens to work for me on macOS, but I think in
general you cannot rely on performing HTTP requests in fork clusters,
i.e. with mclapply().
Fork clusters create worker processes by forking the R process and
then _not_ executing another R binary. (Which is often convenient,
because the new processes will inherit the memory image of the parent
process.)
Fork without exec is not
2007 Dec 10
1
Building R on Sun Solaris 10 (SPARC) using Sun Studio 12
R Help List:
Just curious if anyone has successfully built R on a SPARC
platform running Sun Solaris 10 using the latest Sun Studio
12 set of compilers. If so, I would be interested in the
compile flags that you used.
I have tried several different builds of version 2.5.1, 2.6.0,
and 2.6.1 using various different compile flags and I am able
to compile and check, but for whatever reason, the
2017 Apr 25
0
R_CMethodDef incompatibility (affects R_registerRoutines)
I recently noticed a change between R-3.3.3 and R-3.4.0 in the definition
of the R_CMethodDef struct.
typedef struct {
const char *name;
DL_FUNC fun;
int numArgs;
-
R_NativePrimitiveArgType *types;
- R_NativeArgStyle *styles;
-
} R_CMethodDef;
I suspect this is the reason that packages installed by R-3.4.0 and loaded
into R-3.3.3 will crash the
2010 Feb 08
2
Error on start R in server
Hello all,
(Thank for your reply)
I have a web-application in Apache Tomcat, when i start R in this
application,
I used packe RSJava
Code
ROmegahatInterpreter interp;
String [] rargs = {"--no-save"};
REvaluator e;
interp = new ROmegahatInterpreter (
ROmegahatInterpreter.fixArgs(rargs),false );
e =new REvaluator ();
Errors
================
R version 2.10.1 (2009-12-14)
2012 Feb 06
1
Segfault on ".C" registration via R_CMethodDef according to 'Writing R Extensions'.
Dear R List,
I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions"
that leads to a segmentation fault (tested on windows and mac os x).
The registration mechanism for ".C" routines via R_registerRoutines and
the R_CMethodDef structure has been enhanced recently with the
addition of two fields, one
2008 Oct 29
0
Package arm
I am having difficulty installing the arm package and would be
grateful if anyone could give some advice.
I have updated my computer to a Mac OS X version 10.5.5 ( processor: 2
x 2.8 GHz Quad-Core Intel Xeon) and I have downloaded R version 2.8.0
I have downloaded the package arm, but when i try to install it, the
following message is given in R:
Loading required package: MASS
Loading
2007 May 11
0
data.entry bugs
In session of R, occour following bug's in de (data.entry) function.
*** caught segfault ***
address 0x2c, cause 'memory not mapped'
Traceback:
1: dataentry(odata, as.list(Modes))
2: de(..., Modes = Modes, Names = Names)
3: data.entry(posto, fecha, serie = registros, status)
4: onEditaSerie(serie, "serie")
5: function () serie <- onEditaSerie(serie,
2007 Oct 04
0
Rexcelpoi
I was experimenting with Rexcelpoi from Armstrong Whit. I was able to
compile the package in my Redhat linux machine with a few warnings but
no errors. I was not able to get the package built on my windows xp
computer, but that is for another post.
I load R on the linux computer and type in the library call to Rexcelpoi
the receive the following error.
library(Rexcelpoi)
*** caught
2010 Oct 10
1
segfault caused by `icfit` in `interval` package
Dear R community,
I am using the R package `interval` in order to perform some modelling
tests of the
NPMLE convergence in the case of censoring. So all I am doing is drawing a
sample
from exponential distribution, making it a censored sample and computing the
NPMLE of
its distribution function. But when run on Linux Calculate 10.4 the program
keeps
crashing and reporting a segmentation fault