similar to: R CMD check vs RStudio check

? Fri, 3 May 2024 19:45:08 +0000 "Boylan, Ross via R-help" <r-help at r-project.org> ?????: > & $R CMD check . > * checking for file './DESCRIPTION' ... ERROR > Required fields missing or empty: > 'Author' 'Maintainer' You're checking a source package directory. This could work, but it's much easier and more reliable to (1) build

Ivan, thank you for the tips; they allowed me to move on to the next problems. By building the tar file first and checking it later, and fixing several other problems I got R CMD check to work. It does *not* delete inst/doc. It also does not run boostrap.R, as far as I can tell, presumably because only devtools does. Check within RStudio continues to delete inst/doc, so this behavior is

Dear R-devs, Scenario: When checking a package via `R CMD check package_tar.ball`, required / suggested packages may be missing. R subsequently returns a list of packages that are missing (delimited by spaces). Example: ``` R CMD check glmSparseNet_0.99.13.tar.gz * using log directory '/home/ubuntu/Bioconductor/glmSparseNet.Rcheck' * using R Under development (unstable) (2018-06-06

R 2.15.2 installed as a regular user on Windows 7. Three issues: 1. There is a start menu item for "R 2.15.2 Help" that opens a local web page. If I click on packages, then base, then abbreviate I get "Firefox can't find the file at /C:/Users/rdboylan/Documents/R/R-2.15.2/library/base/html/abbreviate.html." The page before, which did display, was

I am trying to package some code that is a tweak to the survival package. When I asked earlier, the list consensus was that it would be best to do this as a separate package, dependent on survival. This is proving a bit tricky. I have some run-time and compile time concerns. Run-time, my R code needs R code from survival, and my C code needs C functions from survival. Will this all be

Dear Duncan, Following your advice (Thank you for it) I did include into the vignettes params: configuration: !r get(data(sample_analysis)) data: !r get(data(skylineconfig)) And everything seemed (see below) to work fine. devtools::build_vignettes() builds the vignettes. Runs with NO error. By this the .Rmd file, html file and corresponding .R files is being placed into the inst/doc

Hi, there, I used R CMD check to build my "ATGGS" package under window XP system. My R version is 2.7.2. But I encounter some problems. The log file is like: ********************************************************************************** installing R.css in C:/ATGGS.Rcheck ---------- Making package ATGGS ------------ adding build stamp to DESCRIPTION installing R files

Hi, there, I used R CMD check to build my "ATGGS" package under window XP system. My R version is 2.7.2. But I encounter some problems. The log file is like: ********************************************************************************** installing R.css in C:/ATGGS.Rcheck ---------- Making package ATGGS ------------ adding build stamp to DESCRIPTION installing R files

So far you haven't provided a reproducible example yet. I wonder what exactly the object `sample_analysis` is. Sounds like it is an environment. If that is the case, devtools::build_vignettes() will tangle (for the meaning of "tangle", see ?tools::buildVignette) your vignette into an invalid R script. Environments cannot be represented via dput(), so knitr's purl() (eventually

I have a samll package that works well and complies nicly on WinXP, using R-2.4.1 Now I want to add a document so i make a folder inst\doc and put the .tex and .pdf in there. But the complation then crashes. Is this because the installin expects some file to be present in inst if an inst folder is there? This is how the thing progress is on my command promp:

I am not sure if this is already known. I checked BUGS and found some references to similar behavior when R_HOME is set? Here is what I get: (1) Fresh build of 1.4.1 under Linux/RH-7.2. All tests pass. > R CMD check ctest * checking for working latex ... OK * using log directory `/home/andyj/stat/R-1.4.1/library/ctest.Rcheck' Installing *source* package `ctest'

Dear R developers, When building/checking my package (in R 2.6.1 under windows) I run into some messages that I do not completely understand and that do not give me precise enough leads to pinpoint where the error in my package is. I would be very grateful for any suggestions. Did anyone else encounter the same problem before? When building or installing the package, I get the message (no error

Dear all, I am trying to build a home-made package (log2html) to log R output to an HTML file. The package can be build successfully under Solaris, however I am unable to build the system under Windows 2000 Professional. I read (and tried to follow to the letter) Duncan Murdoch's "Building R for Windows" (http://www.murdoch-sutherland.com/Rtools/), in combination with the newest

Dear R devel I am experiencing a problem using R CMD check. I tried to specify the argument outdir, but get every time the error message: Warning: unknown option ‘--outdir==RCHECK’ This happens both on R 2.15.2 Linux, as well as R 3.0.1 Windows, with latest Rtools. Is it just that I am not passing the argument the right way, or is there an issue with R CMD check? I tried to write the argument

Hello, I have a package with a namespace. Because I use Roxygen that overwrites the NAMESPACE file each time it is run, I use a R/zzz.R file with an .onLoad() and .onUnload() functions to take care of loading and unloading my shared library. The problem: if I load my library from a local directory, then the unloading of the package fails, e.g: # loads fine >library(Foo,

Hi, all, I just recently upgraded my computer though I'm using the same OS (XP). But now I'm having difficulty building packages and I cannot seem to solve the problem. I'm using R-2.1.1pat on Windows XP. Here is what I tried: D:\Users\sundard\slib\sundar\R>R CMD CHECK sundar * checking for working latex ... OK * using log directory

In revising the splancs package, I use R CMD check. After a number of changes to various files in the directory tree, R CMD check fails at the * checking for undocumented objects ... ERROR stage as shown below. But running undoc() in R (pointed at the Rcheck directory, not on the older version) doesn't show the same error, and grep on the Rcheck R code finds the function. I ran undoc() under

Hi, This is a follow up to: https://stat.ethz.ch/pipermail/r-devel/2010-July/057921.html The Bioconductor daily builds have been reporting a lot of strange things lately on Windows using R-2.12. This started 2 or 3 months ago and things are not getting better with recent R-2.12. Here is a sample from today's build results. We use Windows Server 2003 R2 for the 32-bit builds, Windows

Folks, I have a personal package which used to build fine. Today when I tried to build the package again, some errors popped up. Could you please help? When I paste the offending function into an R it works correctly. But the package build breaks. $ R CMD check ansecon * checking for working pdflatex ... OK * using log directory '/Users/ajayshah/L/R/packages/ansecon.Rcheck' * using R

Hi: I have have taken over from a colleague who prepared an R package and failed to build it on Windows. I am doing this with unix as I am a mac user. Below is the output I get when I use the build command: [gattuso:unix/R/CO2.Rcheck] gattuso% R CMD build CO2 * checking for file 'CO2/DESCRIPTION' ... OK * preparing 'CO2': * checking whether 'INDEX' is up-to-date ...