similar to: grDevices segfault when building R4.4.0 on RHEL 9.1.

Hi Ivan, An apology, I was away for quite a bit. To reproduce the setup: I have been using the default GCC in RHEL 9.1. gcc -v Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/11/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-host-pie

Dear Miguel Esteva, I couldn't get a Red Hat "ubi9" container to install enough dependencies to build R. Is there a way to reproduce your setup on a virtual machine somewhere? On Fri, 3 May 2024 00:42:43 +0000 Miguel Esteva via R-help <r-help at r-project.org> wrote: > *** caught segfault *** > > address 0x1801fa8f70, cause 'memory not mapped' > >

Thank you! Installing openblas and then using ./configure --without-lapack --with-blas --enable-R-shlib ..got everything working. Does this need reporting upstream as a bug in R or lapack? I'm good now, but it might help others to get this fixed. Simon. -----Original Message----- From: Ivan Krylov <ikrylov at disroot.org> Sent: 08 May 2024 20:05 To: Simon Andrews

I'm having a strange problem compiling R4.4.0 on an AlmaLinux9 box. I've compiled previous versions OK on the same hardware/software (last was R4.3.2) but 4.4.0 is repeatedly failing. Configuration works OK. ./configure --prefix=/bi/apps/R/4.4.0 --enable-R-shlib R is now configured for x86_64-pc-linux-gnu Source directory: . Installation directory: /bi/apps/R/4.4.0

? Wed, 8 May 2024 16:59:25 +0000 Simon Andrews <simon.andrews at babraham.ac.uk> ?????: > The lapack libraries are: > > $ rpm -qa | grep lapack > lapack-3.9.0-10.el9.x86_64 > lapack64_-3.9.0-10.el9.x86_64 > lapack64-3.9.0-10.el9.x86_64 > lapack-devel-3.9.0-10.el9.x86_64 Thanks for this information! I figured out I needed to enable the "PowerTools/CRB" repo,

I have an R program I am attempting to use to generate some SVGs. I've been using the cairoDevice library. When running a session not connected to an X session (like if I'm sshed in), attempting "library(cairoDevice)" causes: *** caught segfault *** address 0x8, cause 'memory not mapped' Traceback: 1: .C("R_gtk_setEventHandler", PACKAGE =

Hi, Getting rquantlib working on 16.04 was discussed just two weeks ago here: https://github.com/eddelbuettel/rquantlib/issues/119 I'll repeat my findings here for convenience. 1. git clone|lballabio/QuantLib ||./autogen.sh ./configure --prefix=$HOME/.local --enable-intraday make install| 2. git clone|eddelbuettel/rquantlib|and remove|CXX_STD=CXX11|from|src/Makevars.in||| 3. From

Hi, I have some surprising trouble installing the gputools package. This is a linux box running Fedora with an Nvidia GeForce GTX 260 card and R 2.12.1 I had gputools running on it for the past several months. Wanting to update to the newest version, I simply executed install.packages("gputools") from within R. This should mean that the problem isn't in the hardware or OS. Errors

Hello, I'm trying to install KEGGSOAP with bioconductor but i'm facing this problem: /> biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'KEGGSOAP' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz' Content type

Thanks for the report, but unfortunately I cannot reproduce on my system (either macOS nor Linux, from the command line) to debug. Did you run this in the command line version of R? I would not be surprised to see such a crash if executed from a multi-threaded application, say from some GUI or frontend that runs multiple threads, or from some other R session where a third party library

Hi, I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install) I found that it compiled and went through the tests fine. The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?

This code actually happens to work for me on macOS, but I think in general you cannot rely on performing HTTP requests in fork clusters, i.e. with mclapply(). Fork clusters create worker processes by forking the R process and then _not_ executing another R binary. (Which is often convenient, because the new processes will inherit the memory image of the parent process.) Fork without exec is not

R Help List: Just curious if anyone has successfully built R on a SPARC platform running Sun Solaris 10 using the latest Sun Studio 12 set of compilers. If so, I would be interested in the compile flags that you used. I have tried several different builds of version 2.5.1, 2.6.0, and 2.6.1 using various different compile flags and I am able to compile and check, but for whatever reason, the

I recently noticed a change between R-3.3.3 and R-3.4.0 in the definition of the R_CMethodDef struct. typedef struct { const char *name; DL_FUNC fun; int numArgs; - R_NativePrimitiveArgType *types; - R_NativeArgStyle *styles; - } R_CMethodDef; I suspect this is the reason that packages installed by R-3.4.0 and loaded into R-3.3.3 will crash the

Hello all, (Thank for your reply) I have a web-application in Apache Tomcat, when i start R in this application, I used packe RSJava Code ROmegahatInterpreter interp; String [] rargs = {"--no-save"}; REvaluator e; interp = new ROmegahatInterpreter ( ROmegahatInterpreter.fixArgs(rargs),false ); e =new REvaluator (); Errors ================ R version 2.10.1 (2009-12-14)

Dear R List, I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions" that leads to a segmentation fault (tested on windows and mac os x). The registration mechanism for ".C" routines via R_registerRoutines and the R_CMethodDef structure has been enhanced recently with the addition of two fields, one

I am having difficulty installing the arm package and would be grateful if anyone could give some advice. I have updated my computer to a Mac OS X version 10.5.5 ( processor: 2 x 2.8 GHz Quad-Core Intel Xeon) and I have downloaded R version 2.8.0 I have downloaded the package arm, but when i try to install it, the following message is given in R: Loading required package: MASS Loading

In session of R, occour following bug's in de (data.entry) function. *** caught segfault *** address 0x2c, cause 'memory not mapped' Traceback: 1: dataentry(odata, as.list(Modes)) 2: de(..., Modes = Modes, Names = Names) 3: data.entry(posto, fecha, serie = registros, status) 4: onEditaSerie(serie, "serie") 5: function () serie <- onEditaSerie(serie,

I was experimenting with Rexcelpoi from Armstrong Whit. I was able to compile the package in my Redhat linux machine with a few warnings but no errors. I was not able to get the package built on my windows xp computer, but that is for another post. I load R on the linux computer and type in the library call to Rexcelpoi the receive the following error. library(Rexcelpoi) *** caught

Dear R community, I am using the R package `interval` in order to perform some modelling tests of the NPMLE convergence in the case of censoring. So all I am doing is drawing a sample from exponential distribution, making it a censored sample and computing the NPMLE of its distribution function. But when run on Linux Calculate 10.4 the program keeps crashing and reporting a segmentation fault