similar to: igraph_vertex

Hi, first of all, your example was not reproducible! But once I added "library(igraph)" and "library(scico)" plus generally replaced "aes_collapsed" by "edge_list", I started to work :-) Anyway, the error is produced by this line: + edge.width= network, It seems to me that you have forgotten to name a variable here (you now use the whole network

Dear coummunity Thanks a lot to David and Kimmo. Yes I see now that I need to provide the two raw tables. Find here the reproducible example. Kind regards Sibylle # R-labraries library(circlize) library(ggplot2) library(igraph) library(tidyverse) library(RColorBrewer) library(stringi) library(scico) library(plotly) library(ggraph) # Tables aes<-read.csv("Test_adjac.csv",

The reason html is specifically advised against as a format is that it does things like mangling data such as is happening in your example. You should repost using settings on you mail client for plain-text. Your code should start by loading necessary packages. You should also not post screen output versions of code since that will insert lots of superfluous "+"'s. Some but not

On 2/24/24 12:10, Kimmo Elo wrote: > Hi, > > first of all, your example was not reproducible! But once I added > "library(igraph)" and "library(scico)" plus generally replaced > "aes_collapsed" by "edge_list", I started to work :-) After copying your lead in that replacement the error I got was: network <-

Hi again, your code is still not reproducible without modifications, but I succeed in getting the data straight. All read.csv-command are missing 'sep="\t"', it is need to read you tsv-data. And it could be more reproducible if you used e.g. --- snip --- aes<-read.csv(text=" A.A B.B C.C D.D E.E F.F A.A 0 0 5 5 5 5 B.B 4 0 1 1 1 1 C.C 5 5 0 5 4 2 D.D 5 0 5 0 5 3 E.E

Hi, a quick additional note: try "edge.width= E(.)$weight" instead of the current "edge.width= network". Seems to work and makes a visible difference... HTH, Kimmo su, 2024-02-25 kello 19:11 +0000, Kimmo Elo kirjoitti: > > Hi again, > > your code is still not reproducible without modifications, but I > succeed in getting the data straight. All

Dear Sibylle, your example is not working! E.g. no data for "aes_collapsed". Best, Kimmo ke, 2024-03-20 kello 19:28 +0100, SIBYLLE ST?CKLI via R-help kirjoitti: > Dear community > > I am using ggraph to plot a network analysis. See part 2 in the working > example. > Besides different colors for different groups of nodes: > --> geom_node_point(aes(size =

Dear community Find enclosed the full working example. Many thanks Sibylle Test_cat.csv Names Subcategory_type sources.cyto source Factor A.A material "A" A 1 B.B material "B" B 1 C.C regulation "C" C 1 D.D regulation "D" D 1 E.E habitat "E" E 1 F.F cultural "F" F 1 Test_adjac.csv

Dear community I am using ggraph to plot a network analysis. See part 2 in the working example. Besides different colors for different groups of nodes: --> geom_node_point(aes(size = V(network)$hub_score*200, color= as.factor(V(network)$community))) I additionally want to consider different colors for different edge groups The grouping is defined in the edge_list$relationship: negative

Hi, this seems to work (assuming that your problem was the setting of colours...): --- snip --- network %>% ggraph(., layout = "auto") + # This produces an error... # geom_edge_arc(curvature=0.3, aes(width=(E(network)$weight/10), color=c("darkblue", "red")[as.factor(edge_list$relationship)], alpha=0.5)) + # ... this works :-)

Dear Kimmo First of all many thanks for the valuable advice to publish code and csv. Noted. Yes, "edge.width= E(.)$weight" makes definitively sense. In the following code, which loads the tiff file, I get the following error tiff("figures/AES_network_bymembership.tiff", width=1000, height=700, res=120) Warning message: In doTryCatch(return(expr), name, parentenv, handler) :

I have a diagram to be included in latex, where all my figures are .eps graphics (so pdflatex is not an option) and I want to achieve something like the following: three concentric filled circles varying in lightness or saturation. It is easiest to do this using transparency, but in my test using the postscript driver, the transparent color fills do not appear. Is it correct that postscript()

Dear Ivan Thanks a lot. I used: windowsFonts(Helvetica = windowsFont("Helvetica")) No warning now with Helvetica Additionally I used "sans", similarly no warning in the first part. But still not able to open tiff with both versions: Using "stress" as default layout > dev.off() TIFFOpen: figures/AES_network_bymembership.tiff: Cannot open. RStudioGD 2

I've hit a bug on Ubuntu 20.04. The issue occurred both with the R version that shipped with Ubuntu last week, and it is occurring now with the CRAN packages from one of the mirros (deb http://cran.mirror.garr.it/mirrors/CRAN/bin/linux/ubuntu/ focal-cran40/). The issue occurs whether I use the deb package for viridis in the Ubuntu repos, or I install it with `install.packages()` in R.

? Mon, 26 Feb 2024 09:02:56 +0100 SIBYLLE ST?CKLI via R-help <r-help at r-project.org> ?????: > In the following code, which loads the tiff file, I get the following > error This warning is definitely worth investigating, but it shouldn't interrupt your code. Does the figure come out wrong after you see this warning? > In doTryCatch(return(expr), name, parentenv, handler) :

Hola a todos: Alguién me podría explicar cuales son las diferencias entre las diferentes escalas de viridis en ggplot2, es decir en qué se diferencian scale-colour_viridis_d de scale_colour_viridis_c, scale_colour_viridis_b. Y cual es la diferencia entre scale-fiil-viridis_d de scale-fill_viridis_c y de scale_fill_viridis-b. He estado buscando la diferencia en internet y no he encontrado nada al

De acuerdo a Bard; ? scale_colour_viridis_d: Esta función utiliza la paleta de colores "viridis" en una escala continua, donde los colores varían de forma suave y continua. Es adecuada para representar datos en los que se desea resaltar las variaciones sutiles en los valores de la variable. ? scale_colour_viridis_c: Esta función también utiliza la paleta de colores

I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran install.packages(listofpackages). Now I have 352 packages on the new machine but several very common packages (like much of the

Il 30/04/20 01:39, Dirk Eddelbuettel ha scritto: > > On 30 April 2020 at 01:24, Samuele Carcagno wrote: > | I've hit a bug on Ubuntu 20.04. The issue occurred both with the R > | version that shipped with Ubuntu last week, and it is occurring now with > | the CRAN packages from one of the mirros (deb > | http://cran.mirror.garr.it/mirrors/CRAN/bin/linux/ubuntu/ > |

> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: > > I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran