similar to: A demonstrated shortcoming of the R package management system

>>>>> Ben Bolker >>>>> on Wed, 20 Mar 2024 13:25:33 -0400 writes: > Hmm, looks platform-specific. Under Linux both RStudio > and external R console return > a0b52513622c41c11e3ef57c7a485767 > for digest::digest(install.packages) Well, platform-specific maybe, notably probably the *RStudio*-version matters (for once). One one

The r2u repository [1] has been providing CRAN packages as Ubuntu binaries (with *full* and *complete* dependency resolution) since last May. It is being served from a well-connect Internet2 mirror thanks to the University of Illinois making it *fast*. By relying on the bspm package [2], it can access the 20k binaries (all of CRAN, essentially, and around 240 BioConductor packages for the two

Hi folks, I love the Phia package andwant to use it with glmmTMB, but when i try to use the interactionMeans command, i get the below error modelrepeatedmain2 <- glmmTMB(counts ~ cluster*nominated*nominator*junior_senior+Ltime+ (1|school)+(1|id), data=d_shortf, family=nbinom1)

Hi List, I'm having some trouble finding documentation for the package glmmTMB. I would like to fit a zero-truncated poisson, what do I need to specify in "family = " for this distribution? Thanks! Alice [[alternative HTML version deleted]]

On 6 June 2023 at 23:33, Johan Andresen wrote: | Cheers - my response mixes up the order of things: | | The suggested apt way INSTALLED INTERFLEX nicely. Lesson learned: install | dependencies from apt if a package/library isn't in apt search. | | Yes I also tried install.packages('interflex'). RStudio console complained | about the same packages like this: | ERROR: dependency

Dunno ... But you might do better posting this on the r-sig-mixed-models list where it both should fit better and where you are more likely to find the relevant expertise. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu,

I can understand why it changes the game. It would be sweet if we could do something like r2u for Debian, but for now > we can't. Switching between Debian and Ubuntu is not that onerous though. Do you mind clarifying what you do here? Do you operate Ubuntu when working in R? Or do you somehow operate Ubuntu to manage R packages and dependencies, and then switch back into Debian to carry

Cheers - my response mixes up the order of things: The suggested apt way INSTALLED INTERFLEX nicely. Lesson learned: install dependencies from apt if a package/library isn't in apt search. Yes I also tried install.packages('interflex'). RStudio console complained about the same packages like this: ERROR: dependency 'xyz' is not available for package ''abc" *

Duncan Murdoch <murdoch.duncan <at> gmail.com> writes: > > On 04/10/2015 10:10 AM, Jonathan Greenberg wrote: > > Folks: > > [snip snip snip] > > > > Is there a way to do a conditional importFrom based on the OS? Or can I > > safely ignore this (I'm trying to submit to CRAN). > > > > Yes, you can put conditionals into the

On 16 March 2023 at 13:39, Felipe Contreras wrote: | I see R by default installs packages in ~/R. I know I can change the | default directory with R_LIBS_USER, but software shouldn't be | polluting the home directory. | | For example both python and node install packages to ~/.local/lib, | ruby to ~/.local/share. They don't install to for example ~/node. | | R should do the same: it

Luben, We all have different types of learning and how we approach this, let alone how we decompose things. With that, sorry you found this frustrating. Many of us put volunteer time into this trying to make things 'possible' and preferably 'easy' but we don't always get there. That said, I have shown multiple times over the last few years that the simple _one statement

This is definitely tangential to the list: I'm on Ubuntu (22.04.2 LTS) not Debian and I'm sure this is about issues in the Ubuntu package management on my machine, R is only revealing them. The original subject line came from me wondering if my going over to the r2u repository would solve the problem.? However, as I think Dirk said, that's only really likely to be answered by trying

I was delighted I with how fast (faster than a tickled toddler giggles) r2u scarfed packages I. up my Pop!_OS (Ubuntu in party attire tuned for System76). But, despite 40 years as my own sys admin (classic fool for a client?), I bolluxed up, ending up with an install chain that was inferior to compiling from source, despite having to occasionally track down system dependencies. Absolutely no

Hello, Are there any plans to add R packages for Ubuntu on other architectures in addition to amd64? We are looking for s390x packages as the version from the distro's package manger is 4.2.2. I'm happy to help in any way I can. Thank you. Regards, Vivian Kong Linux on IBM Z Open Source Ecosystem IBM Canada Toronto Lab [[alternative HTML version deleted]]

Hi Dirk, One side observation: r-cran debian now seems to be in Ubuntu 20.10 Universe so I don't need to add the repo any more. Here is a reproducible example that fails with the latest r-cran-rcppparallel but works when I manually install the source package: require(rstan) stancode <- 'data {real y_mean;} parameters {real y;} model {y ~ normal(y_mean,1);}' mod <-

Folks: I am getting a build failure when I: #' @importFrom utils shortPathName which roxygenizes it to the NAMESPACE. I suspect this is because this particular function is Windows-only, but I'm a bit confused how I should "properly" importFrom a function like this so it doesn't cause a build failure, but I don't get a note in my R CMD CHECK if I DON'T have it:

Hi, I see R by default installs packages in ~/R. I know I can change the default directory with R_LIBS_USER, but software shouldn't be polluting the home directory. For example both python and node install packages to ~/.local/lib, ruby to ~/.local/share. They don't install to for example ~/node. R should do the same: it should install packages to somewhere inside ~/.local by default.

Dear all, I have had some rather serious difficulties getting graphics and analysis packages to load in R on my new Ubuntu Install. The trouble seems to begin when attempting to install TMB. I have done a full purge of r-base r-base-dev and r-base-core and reinstalled the newest version of RStudio (not that this should matter). I'm not sure what to try next. many thanks! Brandon Z >

We are trying to install a 32-bit SLES9-SP4 paravirtual machine on a 64-bit SLES10-SP1 Dom0 host from scratch. We have two problems: 1. The YaST2 VM creation tool fails to create a vm if a network card is selected. 2. The initial vm boots from the SLES9-SP4 iso file, but then complains it can''t find the installation source. Here is the /etc/xen/vm/file (after manually editing for a

Frank, Your html mail still upsets my reader so still no quote. I do not know what you refer to as "r-cran". Maybe you mean that Debian and Ubuntu have packages in the distro? If so that is true since say 2003 when I started adding via r-cran-rodbc which were actually followed by your design package before it was rms and on cran... To take the rstan example, it is in Debian