similar to: Strange error in R CMD check --timings

Am 02.07.23 um 18:01 schrieb Duncan Murdoch: > This SO post: https://stackoverflow.com/q/76583828 describes a strange R > CMD check error. Depending on the contents of a comment in one of the > examples sections of a help page, an error like this could be triggered: > > > base::assign(".dptime", (proc.time() - get(".ptime", pos = >

I'm having a very hard time making R CMD check produce a clean check on examples because of the timings inserted into examples by R CMD check. I am getting a difference on every example output caused by timing information being inserted by 'R CMD check'. The current 'Writing R Extensions' manual[1] states on p. 14: If directory tests has a subdirectory Examples

Good morning, we recently observed a problem with importing S3 generics from a foreign package (without namespace), defining a S3 method in a package _with_ namespace and the `cleanEx()' function which is automatically generated and executed before examples are run by R CMD check. To be more precise. Package `strucchange' defines a S3 generic sctest <- function(x, ...)

Hi, Does anyboody have insight into what this error terminating "R CMD check" on an in-house package may imply? > ### > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n") Error in get("ptime", pos = "CheckExEnv") : unused argument(s) (pos = "CheckExEnv") Calls: cat -> cat.default

In R version 2.6.1 (2007-11-26) and R version 2.6.1 Patched (2008-01-19 r44061) on openSUSE 10.2 (X86-64) > gctorture() > proc.time() Error: protect(): protection stack overflow The problem with this is that then R CMD check --use-gct foo ALWAYS FAILS with > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n") Error in

Hello everybody, I am just trying to put together my first own CRAN-able package. I have completed the programming and my code works OK. But now when I perform R CMD check agsemisc_1.0-2.tar.gz and R gets to the step * checking examples ... I receive the following error message: > print(bwplot(Species~Sepal.Length, data=iris, panel=panel.bwstrip)) Error in rep(T, length(x)) : T used

After a bunch of discussion in the core group, we have decided to deprecate the delay() function (which was introduced as "experimental" in R 0.50). This is the function that duplicates in R code the delayed evaluation mechanism (the promise) that's used in evaluating function arguments. The problem with delay() was that it was handled inconsistently (e.g. sometimes you would see

Hi all, Today, i just installed the newest R version 2.10.1 and other necessary tools for building R package under windows,e.g. Rtools, perl. All are the newest version. After the correct configuration under windows, i use it to re-check my old package. I found the following prolem when checking EXAMPLE, which did not exist before this re-installation. ######## * checking examples ... ERROR

On a SUN 280R running Solaris 9... The configure and make steps completed without errors. But when I try to perform the make check step, I get the following: $ make check FORCE=FORCE `Makedeps' is up to date. running code in 'base-Ex.R' ...*** Error code 1 make: Fatal error: Command failed for target `base-Ex.Rout' Current working directory /usr/local/R-2.0.0/tests/Examples ***

I have R v2.0.1 already running on the machine in question; a fairly generic Fedora Core 3 machine. I am trying to build the new version 2.1.0 and have not been able to troubleshoot the problem I encountered. I'm hoping someone else has seen it and can suggest a troubleshooting avenue to me. The build succeeds, both from the source RPM and from the tarball. I believed I had all the build

Dear listers, I was used to package pgirmess under Windows with everything OK, but, for the first time, I had a trial this afternoon on Ubuntu 7.10 gutsy (I have a double boot computer and work more and more under unix) and R 2.7.0. Everything went OK except this: sudo R CMD check pgirmess ..... * checking examples ... ERROR Running examples in 'pgirmess-Ex.R' failed. The error most

Example run and stack trace: wazor /s/src/stat/R-1.8.0/tests/Examples $ ../../bin/R --no-save < base-Ex.R R : Copyright 2003, The R Development Core Team Version 1.8.0 (2003-10-08) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a

Dear all -- I want to compute weighted.mean() for grouped rows. Data frame extract is just below. For each Key, I want the mean of IAC weighted by Wt. DP0[1:20,] Key IAC Wt 2 C3-PD030020050.PD030020050.3.12.3.0 0.765 0.8590000 3 C3-PD030020050.PD030020050.3.12.3.0 0.764 0.8449651 4 C3-PD030020050.PD030020050.3.12.3.0

Full_Name: Madeleine Yeh Version: 1.9.1 OS: AIX 5.2 Submission from: (NULL) (151.121.225.1) After compiling R-1.9.1 on AIX 5.2 using the IBM cc compiler, I ran the checks. One of them failed. Here is the output from running the check solo. root@svweb:/fsapps/test/build/R/1.9.1/R-1.9.1/tests/Examples: ># ../../bin/R --vanilla < stats-Ex.R R : Copyright 2004, The R

Hello, I have been developing a package for phylogenetic analysis which I plan to submit to CRAN soon. It passes R CMD check with no warnings on my linux and Mac OS X machines. I don't have much experience with Windows and have been using the win-builder service to see how the package compiles on Windows. (Thank you for this service, Uwe, it is a huge time saver for me!) I have tried

Dear all -- I have a data frame containing data related to heat gain through windows. The general form is ... Key ProfA IAC <many other numeric columns> AAA 0 .7 AAA 10 .6 AAA 0 .66 AAA 20 .45 (more AAA rows) (then AAB rows) 'Key' identifies the physical configuration ... rows with a given Key contain data for same window under various

Dear R-ers, My aggregation saga continues. Using the following sequence, I can calculate any statistic for row groups and merge the result back to all associated rows ... > WM = by( D60, D60[ "KeyProfA"], FUN=function(x) weighted.mean( x$IAC, x$Wt)) > D60$IAC.WM = as.numeric( WM[ D60$KeyProfA]) > class( WM) [1] "by" Questions ... 1) Is this a reasonable way

I am trying to use the friedman.test() on a data frame, d, but I am receiving the following error message: > d AW HS IAC WA 1 6 8 3 5 2 2 2 3 6 3 7 7 8 3 4 8 5 4 5 .... 20 2 5 2 7 21 7 7 6 7 22 7 8 6 8 23 6 8 4 5 24 5 7 5 2 > friedman.test(d) Error in any(is.na(groups)) : argument "groups" is missing, with no default I think I

Hi folks, I'm attempting to compile and install 2.5.0, and "make check" is failing one of the earlier sanity tests. I'll append the relevant portion of the Rout.fail file below, but I've narrowed it down manually to a single command: > sessionInfo() R version 2.5.0 (2007-04-23) x86_64-unknown-linux-gnu locale:

Greetings, I am porting the openssh-portable 6.8 release to the HP NonStop (NSE) platform. Prior versions were no real problem, with minor tweeks. However, with the inclusion of regress/netcat.c, which depends on arpa/telnet.h, we have an issue. Unfortunately, the platform does not have this file, nor anything like it - telnet is done rather differently. We do have a version of netcat (0.7.1