Displaying 20 results from an estimated 600 matches similar to: "Count matrix of GSE146049"
2023 Apr 02
1
Count matrix of GSE146049
How can I subscribe to R genomic list?
On Sun, 2 Apr 2023, 9:28 pm Peter Langfelder, <peter.langfelder at gmail.com>
wrote:
> It's a microarray data set, so I don't think you would want to apply
> an RNA-seq pipeline. You'd be better off applying a normalization
> appropriate for this type of microarray data.
>
> HTH,
>
> Peter
>
> On Sun, Apr 2, 2023
2023 Apr 02
1
Count matrix of GSE146049
It's a microarray data set, so I don't think you would want to apply
an RNA-seq pipeline. You'd be better off applying a normalization
appropriate for this type of microarray data.
HTH,
Peter
On Sun, Apr 2, 2023 at 11:09?PM Anas Jamshed <anasjamshed1994 at gmail.com> wrote:
>
> I want to get the count matrix of genes from
>
2012 Nov 15
4
Selecting the "non-attribute" part of an object
I have two matrices, generated by R functions that I don't understand.
I want to confirm that they're the same, but I know that they have
different attributes.
If I want to compare the dimnames, I can say
> identical(attr(tm, "dimnames"), attr(tmm, "dimnames"))
[1] FALSE
or even:
> identical(dimnames(tm), dimnames(tmm))
[1] FALSE
But I can't find any
2008 Nov 25
6
bioinformatics repository?
Hi all, I'm new to Centos, just moved here from Gentoo Linux.
I have to install a server for bioinformatics purposes and I see that
default yum repositories do not include any bioinformatics software
(i.e. ncbi-toolkit, blat, and others). I'm googling a bit but I can't
find a valuable solution: which is (or which are) the best repository
I should add to have a satisfying list
2007 Mar 09
2
Is there any variable for Voicemail Password in Asterisk
Hi guys
This is my Ist post on this group. Is there any variable like ($VM_CALLERID
for voicemail mailbox) for accessing Asterisk Voicemail password which is
set through comedian mail.??????????????
plz reply me as soon as possible....
<html><div><PRE class=quote><IMG height=2
src="http://graphics.hotmail.com/greypixel.gif" width="100%"
2007 Dec 18
1
Call Recording on Hanup
Hello everyone out there, I am having a problem in call recording with php
agi library. I have already recorded voice after playing an IVR, to accept
the recording user need to press one. but I need to record a call on hangup,
Is there any way to do it. Currently i am using record_file() function in
php. Is there any way to record voice by using record_file() function with
hangup. can anyone helps
2007 Nov 14
1
reading tables from url
I'm trying to read some web tables directly into R. These are both
genome sequencing projects (eukaryotes and metagenomes) from NCBI and
look very similar; however, only the first one works.
http://www.ncbi.nlm.nih.gov/genomes/leuks.cgi
http://www.ncbi.nlm.nih.gov/genomes/lenvs.cgi
I added ?dump=selected to the end of the url string to get a tab-
delimited file (which is what happens
2005 May 02
2
"Special" characters in URI
Hello!
I am crossposting this to R-help and BioC, since it is relevant to both
groups.
I wrote a wrapper for Entrez search utility (link for this is provided bellow),
which can add some new search functionality to existing code in Bioconductor's
package 'annotate'*.
http://eutils.ncbi.nlm.nih.gov/entrez/query/static/esearch_help.html
Entrez search utuility returns a XML document
2015 Aug 07
3
download.file() on ftp URL fails in windows with default download method
Hi,
> url <- "ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt"
> download.file(url, tempfile())
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt'
Error in download.file(url, tempfile()) :
cannot open URL
2010 Oct 22
1
cannot connect to an FTP server with long HELLO message
Hi,
Trying to access files on the ftp server at ftp.ncbi.nih.gov
will either give a time out or sometimes even a segfault on Linux.
The 2 following methods give the same results:
f <-
url("ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/GDS/GDS10.soft.gz", open="r")
download.file("ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/GDS/GDS10.soft.gz",
destfile=tempfile())
2002 Oct 19
0
Fwd: [hangout] Busy Week for NYLXS [ruben@mrbrklyn.com]
On 2002.10.19 19:44 Ruben I Safir wrote:
NYLXS is having a watershed week this week and I'd like to personally
extend my hope to everyone to participate and prosper from all of our
activities.
On Sunday, We are papering Long Island City and Astoria with Flyers for the
Free Software Business Demo at LaGaurdia College. We are meeting at the
front Entrance of the Queens Citicorp Building
2009 Nov 19
1
problem post request with RCurl
Hi, I am trying to use a CGI service (Pubchem PUG) via RCurl and am
running into a problem where the data must be supplied via POST - but
I don't know the keyword for the argument.
The data to be sent is an XML fragment. I can do this via the command
line using curl: I save the XML string to a file called query.xml and
then do
curl -d @query.xml
2008 Mar 18
7
download.file()
Hi,
I wanted to download a file and did the following:
---------------------------------------------------------
> fileLink <- 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE1000/GSE1000_RAW.tar'
> download.file(fileLink,'/geoDat')
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/series/GSE1000/GSE1000_RAW.tar'
ftp data connection made,
2018 May 02
7
download.file does not process gz files correctly (truncates them?)
Dear all,
I've noticed by trying to download gz files from here :
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811
At the bottom one can download GSM907811.CEL.gz . If I download this
manually and try
oligo::read.celfiles("GSM907811.CEL.gz")
everything works fine. (oligo is a bioConductor package)
However, if I download using
download.file("
2007 Dec 14
6
Analyzing Publications from Pubmed via XML
I would like to track in which journals articles about a particular disease
are being published. Creating a pubmed search is trivial. The search
provides data but obviously not as an R dataframe. I can get the search to
export the data as an xml feed and the xml package seems to be able to read
it.
xmlTreeParse("
2002 Oct 13
2
ssh tunnels
Is there a way to use ssh tunnels to access samba shares on a remote
system from a Win 2K box? I have some linux boxen behind a NAT in a data
center, and someone wants samba access to to one of them. No way in hell
am I opening it through the NAT. Thanks.
--
Justin Georgeson
UnBound Technologies, Inc.
http://www.unboundtech.com
Main 713.329.9330
Fax 713.460.4051
Mobile 512.789.1962
5295
2008 Feb 18
2
Huge number
Hi,
I'm trying to calculate p-value to findout definitely expressed genes
compare A to B situation.
I got this data(this is a part of data) from whole organism , and each
number means each expression values (that means, we could think 'a' gene
is 13 in A situation, and it turns 30 in B situation)
To findout probability, I'm going to use Audic - Claverie Method. ( The
significance
2015 Aug 08
2
download.file() on ftp URL fails in windows with default download method
----- Original Message -----
> From: "Uwe Ligges" <ligges at statistik.tu-dortmund.de>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>, "R-devel at r-project.org" <r-devel at r-project.org>
> Sent: Saturday, August 8, 2015 3:57:34 PM
> Subject: Re: [Rd] download.file() on ftp URL fails in windows with default download method
>
>
2005 Oct 09
1
[Fwd: Re: [Swig] typemap + default argument bug?]
(Mostly for Roy):
I saw this on the SWIG list, and wonder if it might be related to the
problems we have been seeing where multi-arg typemaps end up invoking
the wrong wrapper methods. (Not the newly-discovered directorout stuff).
Perhaps if we switched to "compactdefaultargs" things would start to
work more sanely. Looking at this section of the SWIG docs, it looks
like it should