similar to: `dendrapply` Enhancements

Hello Aidan, Sorry for dropping this for a while. ? Thu, 2 Mar 2023 21:03:59 +0000 "Lakshman, Aidan H" <AHL27 at pitt.edu> ?????: > //after > curnode = eval(lang3(R_Bracket2Symbol, parent->node, DEND_IND), env); lang3() always constructs a new language object. If you do end up using eval(), it may make sense to move lang3() out of the loop and reuse the existing object

> > > Performance statistics are interesting. If we assume the two populations > have a total of `m` members, then this implementation runs slightly slower > for m < 20, and much slower for 50 < m < 100. However, this implementation > works significantly *faster* for m > 200. The breakpoint is precisely when > each population has a size of 50; `qwilcox(0.5,50,50)`

Dear List, I'm writing to gauge interest in new syntax for positional-only function parameters to be added to R. The pattern of functions accepting other functions as inputs and passing additional ... arguments to them is prevalent throughout the R ecosystem. Currently, however, all such functions must one way or another tackle the problem of inadvertently passing arguments meant to go to

Dear useRs, I am working on a project involving the clustering of a large dataset. I need to extract specific sub-clusters from the parent dendrogram for further analysis. The data is too large for the use of convenient tools such as identify.clust (it selects the specific group of interest on a graph), so alternatively I have saved the plot as a large image file so that it can be printed or

> On 8 Feb 2024, at 15:15, Martin Maechler <maechler at stat.math.ethz.ch> wrote: > >>>>>> Ji?? Moravec >>>>>> on Wed, 7 Feb 2024 10:23:15 +1300 writes: > >> This is my first time working with dates, so if the answer is "Duh, work >> with POSIXt", please ignore it. > >> Why is not `round.Date` and

I?ve been looking at this for a couple hours--it ended up being trickier than I expected to implement well. I?ve attached a new patch here. This version scales significantly better than the existing method for both `pwilcox` and `dwilcox`. Examples are included below. I can?t think of any other ways to improve runtime at this point. That?s not to say there aren?t any, though?I?m hopeful

Dear All   I have the following code set up: Code #1 a <-matrix(seq(0,8, by = sign(8-0)*0.25)) b <-matrix(seq(8,16, by = sign(16-8)*0.25)) c <-runif(1000,50,60) d <-exp(-c*a)+exp(-c*b)   This will give me the obvious error message of lengths not matching. What I am trying to do here is to have 33 rows x 1000 columns d values calculated in total. As an eaxmple for visual, this is what

Hi Everyone, Following the previous discussion on optimizing *wilcox functions, Andreas Loeffler brought to my attention a few other bugs in `wilcox` family functions. It seems like these issues have been discussed online in the past few months, but I haven?t seen discussion on R-devel...unless I missed an email, it seems like discussion never made it to the mailing list. I haven?t seen any bug

Hi all, I think I have some problems to use correctly the function dendrapply. Let suppose dend is a dendrogram object. I would likde to know the cardinal number of leaves depending of each node of the tree dend. It is right that the command attr(dend,"members") gives the total number of leaves, and attr(dend[[1]],"members") gives the number of leaves for the first left

I am a newbie to C (although I did some programming in Perl and Pascal) so forgive me for the language that follows. I am writing because I have a question concerning the *implementation of *(the internal function)* cwilcox* in https://svn.r-project.org/R/!svn/bc/81274/branches/R-DL/src/nmath/wilcox.c. This function is used to determine the test statistics of the Wilcoxon-Mann-Whitney U-test.

Hi, I got a problem when I am trying to insert a call function with pointer arguments. The function C proto-type is the following, void stat_func(char *); >ConstantArray *Cstr = dyn_cast<ConstantArray>(gI->getInitializer()); ...... >Function *exFunc = M->getOrInsertFunction("stat_func", Type::VoidTy, PointerType::get(Type::SByteTy),0); >std::vector<Value*>

Hi list, This looks similar to the problem reported here https://stat.ethz.ch/pipermail/r-devel/2006-April/037199.html by Henrik Bengtsson a long time ago. It is very sporadic and non-reproducible. Henrik, do you remember if your code was using reg.finalizer()? I tend to suspect it but I'm not sure. I've been hunting this bug for months but today, and we the help of other Bioconductor

All, I'm seeing duplication of DICompileUnits in a pass that worked in 3.8. I assume I'm doing something wrong. Would someone be willing to point me in the right direction? The below minimized pass reproduces my issue in 4.0 with the following error: DICompileUnit not listed in llvm.dbg.cu !1707 = distinct !DICompileUnit(language: DW_LANG_C_plus_plus, file: !1, producer: "clang

Thank you. What I need to do to address this? Open an issue on bugs.llvm.org? I'm not sure what the fix needs to be in the cloner. On Thu, Jun 8, 2017 at 4:19 PM, Peter Collingbourne <peter at pcc.me.uk> wrote: > There have in the past been bugs in the cloner involving duplicate > DICompileUnits (see e.g. https://reviews.llvm.org/D29240), this one may > need a similar fix.

Dear I am using the 'as.dendrogram' function from the 'stats' library to convert from an hclust object to a dendrogram with a dataset of size ~30000 (an example code is below). I need the dendrogram structure to use the "dendrapply" and "attributes" functions and to access the child nodes, I do not need any of the plot properties. The problem is that it

Dear All, How can the height of a leaf be extracted from a dendrogram? Sure, I can print it, but I am not able to, say, store it in an object. I think I understand that the height is a property of the split, not the leaf itself, but the printing functions display a "height" or "h" (which changes with "hang") and that is what I want. Obviously, the info is there

Full_Name: John Gavin Version: 2.1.0 patched 18-04-05 OS: windows XP SP2 Submission from: (NULL) (139.149.1.203) Hi, I suspect that there may be a bug in utils::setRepositories(). Starting with > getOption("repos") CRAN CRANextra "@CRAN@"

Hi all, This is the first time I'm writing to R-devel, and this time I'm just asking for the purpose for a certain line of code in stats::as.hclust.dendrogram, which comes up as I'm trying to fix dendextend. The line in question is at line 128 of dendrogram.R in R-3.3.3, at stats::as.hclust.dendrogram: stopifnot(length(s) == 2L, all( vapply(s, is.integer, NA) )) Is there any

Dear R-Help, I have a clustering problem with hclust that I hope someone can help me with. Consider the classic hclust example: hc <- hclust(dist(USArrests), "ave") plot(hc) I would like to cut the tree up in such a way so as to avoid small clusters, so that we get a minimum number of items in each cluster, and therefore avoid singletons. e.g. in this example, you can see

That looks like it does a preorder depth first traversal (I think). I'm looking for postorder. Is there a trivial transform between the two? (I don't know one.) Am I wrong about the preorder/postorder? If not, anything lurking for postorder traversal? Thanks, Dan On Apr 13, 2009, at 2:35 PM, Chris Lattner wrote: > > On Apr 13, 2009, at 11:20 AM, Daniel M Gessel wrote: