similar to: gRaven package - Bayes Nets: 'RHugin' Emulation with 'gRain'

Hi, I'm running a GLMM on binomial choice data. The outputs I receive are sensible except for the degrees of freedom, which come out much larger than expected. Can anyone advise please? Exptl design: Response = Choice Fixed Factors = Position, Treatment and Sex Random Factor = ID nested within Treatment and Sex Covariate = Delay The model: glmmPQL(FreeChoice ~ Position * Treatment + Sex

Hi all, I am very new to R and this might be a simple question but I have looked everywhere you suggest before writing to you. I am trying to change font type from san-serif to a serif (Times New Romans) on all labels and axis of my boxplot. I have used this function in other plots before, e.g.: plot(residuals~lnlifespan, data=mydata, pch=psymb, font=6, xlab="ln reproductive

Hi, If any one has time I need some help understanding the P-values given in the lmer output. Using AIC for model selection I find my minimal model is FOLLOW~MOVERSTATUS+DISTANCE however it appears DISTANCE is not significant at 95% confidence, see output quoted below. However, removing DISTANCE gives a higher AIC=433.5, therefore I will keep it in, but am confused as to what is adds to the

Dear All I am trying to do a repeated measures analysis using lmer and have a number of issues. I have non-orthogonal, unbalanced data. Count data was obtained over 10 months for three treatments, which were arranged into 6 blocks. Treatment is not nested in Block but crossed, as I originally designed an orthogonal, balanced experiment but subsequently lost a treatment from 2 blocks. My

Hello, I have a package for working with Bayesian networks (RHugin - on R- Forge for those interested). It contains a function RHExample that does the same thing as the demo function in the utils package except that it does not display any output in the R console. I use it to build simple networks in the examples section of my .Rd documentation files. Anyway, I thought it would be useful

Is hugin available for Centos 4 or Centos 5? Ted Miller Indiana, USA

Dear all, We are pleased to announce that CRAN now hosts our packages DNAmixturesLite and KinMixLite. These are fully R-based versions of our packages DNAmixtures and KinMix, which rely on a commercial software, HUGIN, for performing efficient computations in Bayesian networks. The lite versions rely instead on gRain for such computations. DNAmixtures provides statistical methods for DNA

Dear all, We are pleased to announce that CRAN now hosts our packages DNAmixturesLite and KinMixLite. These are fully R-based versions of our packages DNAmixtures and KinMix, which rely on a commercial software, HUGIN, for performing efficient computations in Bayesian networks. The lite versions rely instead on gRain for such computations. DNAmixtures provides statistical methods for DNA

Hi R users, This query is regarding the use of the 'envelope' function in Spatstat. My data can be represented as a point process with CONTINUOUS marks: points <- ppp(x=x,y=y, marks=m, window= wind) However the marks are alignments (lines), and so have to be treated differently to normal scalar marks. Hence to create a mcf object with the appropriate test function for alignment

C6 with CR x86_64 Third time when trying to install a packet I get: yum install samba [...] --> Finished Dependency Resolution Error: Package: glibc-2.12-1.7.el6_0.5.i686 (updates) Requires: glibc-common = 2.12-1.7.el6_0.5 Installed: glibc-common-2.12-1.25.el6_1.3.x86_64 (@cr) glibc-common = 2.12-1.25.el6_1.3 Available:

Hi all, There are quite a few of us working on LLVM in the Bristol area. I invite you all to the first Bristol LLVM social: Where: The Hope & Anchor 38 Jacobs Wells Road Bristol BS8 1DR http://www.hopeandanchor.net When: Thursday 20 September from 7pm Look forward to meeting you all there. Jeremy -- Tel:

Dear list, I have been using multivariate multiple regression (MMR) in the form lm(Y~X) where Y and X are matrices of response and predictor variables. I know that summary(mlm.object) would give the usual lm statistics for each response variable separately and that anova.mlm(mlm.object) will give the analysis of variance table of the mlm object. However, anova.mlm (also manova(mlm.object))

hello. I have a query about the Matrix package for R. I wrote some code a while ago using the Matrix package version 1.6.2 with an early version of R, to do some linear least squares for regression: xn [,1] [,2] [,3] [,4] [1,] 1 0.7429352 0.5519528 0.4100652 [2,] 1 0.7443713 0.5540886 0.4124477 [3,] 1 0.7447385 0.5546355 0.4130584 [4,] 1 0.7459597 0.5564558

Hi, I noticed that the R reference manual seems to be missing the license permissions on the copyright page. Below is a patch to "refman.top" which adds the same permissions as the @permission{} macro in "R-defs.texi". I'm filing this bug as I have been preparing to publish the R Reference Manual (in several volumes). I plan to donate 5 EUR to the R-foundation for each

A new version of the package "deal" is now available on CRAN. The package is for learning (parameters and structure) of Bayesian networks and provide an interface to Hugin. In the new version there is an interface to the package dynamicGraph which allows for editing and callbacks of graphs in the displayed window. Try > install.packages(c("dynamicGraph","deal"))

A new version of the package "deal" is now available on CRAN. The package is for learning (parameters and structure) of Bayesian networks and provide an interface to Hugin. In the new version there is an interface to the package dynamicGraph which allows for editing and callbacks of graphs in the displayed window. Try > install.packages(c("dynamicGraph","deal"))

A ZFS file system reports 1007GB beeing used (df -h / zfs list). When doing a ''du -sh'' on the filesystem root, I only get appr. 300GB which is the correct size. The file system became full during Christmas and I increased the quota from 1 to 1.5 to 2TB and then decreased to 1.5TB. No reservations. Files and processes that filled up the file systems have been removed/stopped.

Hi, Below I've flagged some sentences in the R documentation (from cvs) which are garbled in some way. If anyone can clarify what these sentences should say I'd be grateful. The problems were picked up as part of the proof-reading of the R manuals by Ciaran O'Riordan. After looking at the text neither of us could figure out what the documentation was meant to say. -- Brian Gough

Hi, all, I just installed opensuse 11, 64-bit from the kde live cd. I use icewm - gnome and kde desktops are too busy and windowish for my taste, but a lot of programs that I run depend on kde. My video card is a geforce 7600. I'm using the nvidia driver because I couldn't figure out any other way to have dual-monitor support. I am new to opensuse, having used debian lenny previously,

There probably is a way, but it involves some programming. You would need to clone a smooth constructor (e.g. for the "cr" class), and then modify it to add a linear constraint matrix C to the returned smooth object. If b are the smooth coefficients then C should? be the matrix such that s(0) = Cb (you can get this from the Predict.matrix method for the class). Then the constraint