similar to: Compilation error for R 4.0.2

>>>>> Wim R Cardoen writes: > Hello, > I experienced a compiler error when I tried to compile the latest version > of R i.e. R4.0.2 > making iosupport.d from iosupport.c > making lapack.d from lapack.c > making list.d from list.c > making localecharset.d from localecharset.c > grep.c(74): catastrophic error: cannot open source file "pcre2.h" >

On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote: > Hi Arnaud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly when using the single dynamic library (lmkl_rt):

On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure

Hi all, I have the issue: icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip -mp -c eval.c -o eval.o arithmetic.c(66): warning #274: declaration is not visible outside of function int matherr(struct exception *exc) ^

Note that 'intel 2022' is a bit vague. The current version is 2023.1.0, and that has both the 'classic' (icc/icpc/ifort which it seems you used) and new (icx/ixpx/ifx) compilers -- the former are said to be going to be discontinued later this year. R did not know about ifx so did not build with the new set. The parts of the manual Tomas referred to were about the old

This is a long shot as it look as though this may not be supported anymore. Since moving to CentOS 7 we have been using the instantiation feature of systemd to run multiple winbind and smb instances on a single server as part of an HA setup (pacemaker/corosync). In testing samba version 4.8 and beyond we have found that this doesn?t work anymore, or rather the client tools are unable to

Hello, could someone (some mirror) please provide DVD isos of the Centos5 also via ftp/http. The bittorent ports on out network are blocked and at the moment I couldn't find any DVD isos for "regular" download. Thanks, Gernot -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/pgp-signature Size: 189 bytes Desc:

Dear R-developers, I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have been successful until R 3.3.3 but now it stops complaining about pcre though it worked without Intel MKL as follows, ./configure LDFLAGS=-L/genetics/data/software/lib CFLAGS=-fPIC -I/genetics/data/software/include --enable-R-shlib I have used, export MKL_NUM_THREADS=15 export

On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote: > On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote: > > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > >> > After a few days of reading and headache, I finally gave a try at

? Wed, 1 Feb 2023 14:16:54 +1100 Michael Milton <ttmigueltt at gmail.com> ?????: > Is this a bug in the `dyn.load` implementation for R? If not, why is > it behaving like this? What should I do about it? On Unix-like systems, dyn.load forwards its arguments to dlopen(). It should be possible to confirm with a debugger that R passes RTLD_NOW to dlopen() when calling dyn.load(now =

Let me be the first (maybe): CentOS 5.2 is here (at least): http://mirror.chpc.utah.edu/pub/centos/5.2/ Thank you all who worked on it! -------------- next part -------------- No virus found in this outgoing message. Checked by AVG. Version: 8.0.100 / Virus Database: 270.4.1/1513 - Release Date: 22-06-2008 7:52

On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomplete, sometime fantasist et do not give > >

After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per

On our Scientific Linux 6, there is gcc --version gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) and later version (a symbolic at HOME to the system directory), export MKL=/home/jhz22/11.3.3.210/mkl export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64 ./configure --prefix=/home/jhz22 LDFLAGS=-L/home/jhz22/lib CPPFLAGS=-I/home/jhz22/include \ --enable-R-shlib --with-lapack \

Using --with-pcre1 to configure the latest R 4.0 (revision 77988) on an Ubuntu 14.04.5 LTS system gives me the following error: ... checking if lzma version >= 5.0.3... yes checking for pcre2-config... no checking for pcre_fullinfo in -lpcre... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking

Hello, I'm taking 7.4 for a spin.? I did the minimal install, and ran into trouble with groupinstall base.? The trouble seems to stem from elfutils.? One command claims elfutils-libs-0.166-2.el7.x86_64 is missing, and another one claims it's installed.? Not sure what's going on here. [root at ip-172-31-34-187 ~]# yum -y install elfutils.x86_64 Loaded plugins: fastestmirror

Thanks Tomas. Any chance the old version of the error message could be restored? It would definitely be more helpful than the current one. It's confusing to get an error and be told to use --with-pcre1 when you're already using it. H. On 3/18/20 01:08, Tomas Kalibera wrote: > On 3/17/20 8:18 PM, Herv? Pag?s wrote: >> Using --with-pcre1 to configure the latest R 4.0 (revision

Hi r-devel, a recent install of R-3.4.0 RC (2017-04-13 r72510)? on Linux (Ubuntu 16.04.1 LTS) x86_64-linux-gnu? with?g++ (Ubuntu 5.4.0-6ubuntu1~16.04.4) 5.4.0 20160609 (see?http://bioconductor.org/checkResults/devel/bioc-LATEST/malbec2-NodeInfo.html?for more)? results in CXXFLAGS not containing "-O2" as optimisation flag, there is only " -Wall", while?CFLAGS are happy with

I've noticed unstable behavior of nlminb on some Linux systems. The problem can be reproduced by compiling R-3.5.2 using gcc-8.2 and running the following snippet: f <- function(x) sum( log(diff(x)^2+.01) + (x[1]-1)^2 ) opt <- nlminb(rep(0, 10), f, lower=-1, upper=3) xhat <- rep(1, 10) abs( opt$objective - f(xhat) ) < 1e-4 ## Must be TRUE The example works perfectly when

On 16.06.2016 21:39, Ned Slider wrote: > > On 16/06/16 19:41, Walter H. wrote: >> On 16.06.2016 19:40, Frank Cox wrote: >>> On Thu, 16 Jun 2016 19:34:09 +0200 >>> Walter H. wrote: >>> yum -disableplugin=fastestmirror nowseewhathappens. >>> >>> >> yes this goes fast, no timeout; >> can I configure this in /etc/yum.conf? >>