similar to: Rscript fails with some packages (for example, h5)

Hi Dirk, Thanks for the solution. Now I know the work-arounds, but still don't quite get it. Why does R_DEFAULT_PACKAGES has anything to do with library(methods)? If library(h5) works, it should just work, not depend on an environment variable. Rscript is not consistent with R, that's my confusion. Steve 2017-12-26 20:46 GMT+08:00 Dirk Eddelbuettel <edd at debian.org>: >

On 26 December 2017 at 15:24, Sun Yijiang wrote: | After looking into C source code, I found that Rscript by default fills | environment variable R_DEFAULT_PACKAGES with | "datasets,utils,grDevices,graphics,stats", and it somehow fails some | package like h5. | | The problem here is, not setting R_DEFAULT_PACKAGES is equivalent to | setting it to a magic value, it's really

On 26/12/2017 9:40 AM, Dirk Eddelbuettel wrote: > > On 26 December 2017 at 22:14, Sun Yijiang wrote: > | Thanks for the solution. Now I know the work-arounds, but still don't > | quite get it. Why does R_DEFAULT_PACKAGES has anything to do with > | library(methods)? > > Because it governs which packages are loaded by default. And while R also > loads

On 26 December 2017 at 22:14, Sun Yijiang wrote: | Thanks for the solution. Now I know the work-arounds, but still don't | quite get it. Why does R_DEFAULT_PACKAGES has anything to do with | library(methods)? Because it governs which packages are loaded by default. And while R also loads 'methods', Rscript does not. Source of endless confusion. | If library(h5) works, it should

Thanks for the details. I?m new to R, and I?m not blaming anything here, just that I?m still not clear what good it makes to keep this inconsistency between R and Rscript. To me (and probably to many others from Perl/Python etc.), this is shockingly weird. I can live with that, and I also want to know why. Steve Dirk Eddelbuettel <edd at debian.org>?2017?12?27? ??21:15??? > > Duncan,

Hi. I would like to know how to start an embedded R session, and avoid datasets and the standard library packages to be loaded on startup. I've been looking at littler's code (so this is partly a question to Dirk Eddelbuettel...): > /* We don't require() default packages upon startup; rather, we > * set up delayedAssign's instead. see autoloads(). >

Have read the latest code, but I still don't understand why mc_exit needs to write zero on exit. If a child closes its pipe, parent will know that on next select. Best, Yijiang Tomas Kalibera <tomas.kalibera at gmail.com> ?2019?5?20??? ??10:52??? > > This issue has already been addressed in 76462 (R-devel) and also ported > to R-patched. In fact rmChild() is used in

I've been hacking with parallel package for some time and built a parallel processing framework with it. However, although very rarely, I did notice "ignoring SIGPIPE signal" error every now and then. After a deep dig into the source code, I think I found something worth noticing. In short, wring to pipe in the C function mc_exit(SEXP sRes) may cause a SIGPIPE. Code from

Hi All Please see the Rprofile file which i have modified as follows and after that when I start R then I see that R says to me "TRUE" for all the packages implying that all loaded at once. But when i try to use commands as simple as help("lm"), it doesnt work nor any of the menu "Packages" is not working. Although the regression using lm ( Y ~ X ) is working

Also, check the settings of R_HOME and/or R_LIBS. Bill Dunlap TIBCO Software wdunlap tibco.com On Sun, Sep 8, 2019 at 9:58 AM William Dunlap <wdunlap at tibco.com> wrote: > Look at section 6.1 of the R Installation and Admin manual. > > 6.1 Default packages > > The set of packages loaded on startup is by default > > > getOption("defaultPackages") > [1]

I realize this is basic, but I can't figure out the syntax for setting options for R Commander. I'm running Linux Mint and want to increase the R Commander font sizes. I see that there are (apparently command line) options to do so. I have a desktop launcher with the following command line: sh -c 'R_DEFAULT_PACKAGES="$R_DEFAULT_PACKAGES Rcmdr" R "$@"' Can

Thank you Dan but it isn't my tests that are failing (all of them pass without problem) but one of the examples from the inst/examples directory. I did try, however, to start R with the environmental variables as you suggest but it had no effect on my tests. Charles On Wed, May 13, 2015 at 1:51 PM, Dan Tenenbaum <dtenenba at fredhutch.org> wrote: > > > ----- Original Message

See https://stat.ethz.ch/pipermail/r-devel/2017-August/074746.html for the origin of the example here. That pretty(c(-1,1)*1e300, n = 1e9, min.n = 1) gave 20 intervals, far from 1e9, but pretty(c(-1,1)*1e300, n = 1e6, min.n = 1) gave 1000000 intervals (on a machine), made me trace through the code to function 'R_pretty' in https://svn.r-project.org/R/trunk/src/appl/pretty.c . *lo is

Examples similar to pretty(c(-1,1)*1e300, n = 1e9, min.n = 1) with smaller 'n': pretty(c(-1,1)*1e304, n = 1e5, min.n = 1) pretty(c(-1,1)*1e306, n = 1e3, min.n = 1) A report on 'pretty' when working with integers, similar to what led to change of 'seq' fuzz, is https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15137 -------------------------------------------- On Tue,

Hi, I have successfully setup a tinc network between five hosts (in switch mode). Two of the hosts have static and known IP addresses (S1 and S2). Other hosts (H3-H5) connect one (or both) of them. The traffic flows nicely between all hosts. The initial edges (ConnectTo configuration directives) in my test network are: S1<->S2 H3 -> S1 and S2 H4 -> S1 H5 -> S2 As far as I have

Dear friends, I have the following dataframe: YEAR <- c(1996 , 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004 ) T_MAR <- c(2.8, 6.5, 5.4,2.4, 4, 4.1, 3, 4.4, 4.5) T_APR <- c(5.7, 7.8, 7.7, 4.6, 4.7, 6.2,5.7, 5.9, 7) T_MAY <- c(7, 8.8, 10, 6, 5.5, 7.6, 8.5, 7.3, 10.2) BUD <- c(87, 98, 93, 85, 89, 91, 87, 92, 92) BUD_SE <- c(3.6, 2, 2.4, 4, 2.4, 2.4, 4, 2.4, 3) g1 <-

I am using the firebug plugin to debug my javascript code, and I get the following message while debugging. Anyone familiar with this error? See my code below: <title>My Test </title> <script src="json.js" type="text/javascript"></script> <script src="prototype.js" type="text/javascript"></script>

Hi, Bert: Yes, I studied the functions you suggested, but I didn't get to adapt it to my example whose reproducible code I sent in my first email. Here it is the code of the functions I studies: ## par par(mfrow = c(2, 3)) par(cex = 0.6) par(mar = c(3, 3, 0, 0), oma = c(1, 1, 1, 1)) for (i in 1:6) { plot(1, 1, type = "n") mtext(letters[i], side = 3, line = -1, adj = 0.1, cex =

I'm trying to recreate a graph similar to the last one found on this link: https://sites.ualberta.ca/~lkgray/uploads/7/3/6/2/7362679/6c_-_line_plots_with_error_bars.pdf The difference is that I want budbreak on the top, and the temperatures at the bottom. I tried to set par before each graph and include lines, with no avail. Thanks, Bert. Andre On Mon, Jun 19, 2017 at 7:41 PM, Bert Gunter

Dear all, I found the last example of this link ( https://sites.ualberta.ca/~lkgray/uploads/7/3/6/2/7362679/6c_-_line_plots_with_error_bars.pdf) very similar to the one I need to make for my paper, and I think I got what I wanted by applying some of the suggestions of this mail list. Here it is the code I devised (maybe there will be further improvements from the list): YEAR <- c(1996 ,