similar to: How to represent two-dimensonal data in R?

Thanks Eric, I saw that page, too, but it states: "This post describes how to pass external arguments to R when calling a Rscript with a command line." Not what I'm trying to do. Thanks for your reply. Sent from [ProtonMail](https://protonmail.com), Swiss-based encrypted email. > -------- Original Message -------- > Subject: Re: [R] Pass Parameters to RScript? > Local

That's amazing! Thank you!!! One follow up question, if that's OK? If, instead of using hard-coded CSV, I read the CSV into a variable first, then it fails again with a parse error. Code below. So, if I read the CSV into a variable, do I need an additional wrapper method? Seems like it should still work. Thanks in advance for your reply. -M String inputIris =

I do not program in Java but it seems a Java program can make system calls which would be equivalent to running from the command line, but done from within a Java program. Not sure whether that would meet your needs and if not why not. Just a suggestion. Check out http://www.java-samples.com/showtutorial.php?tutorialid=8 On Mon, Oct 30, 2017 at 5:10 PM, Morkus <morkus at protonmail.com>

Is it possible to pass parameters to an R Script, say, from Java or other language? I did some searches, but came up blank. Thanks very much in advance, Sent from [ProtonMail](https://protonmail.com), Swiss-based encrypted email. [[alternative HTML version deleted]]

Thanks Duncan. I can't tell you how helpful all your terrific replies have been. I think the biggest surprise is that nobody appears to be using Java and R together like I"m trying to do. I suppose it should be a surprise since there are no books on the subject and almost no technical documentation other than a few sites here and there. ----- I originally had the "int" as the

Hey Duncan, Hard to debug? That's an understatement. Eyes bleeding.... In any case, I tried all your suggestions. To get "integer" for the final column, I had to change the code to get integers instead of strings. double[] d1 = ((REXPVector) ((RList) tableRead).get(0)).asDoubles(); double[] d2 = ((REXPVector) ((RList) tableRead).get(1)).asDoubles(); double[] d3 = ((REXPVector)

I did a simple search and got hits immediately, e.g. https://www.r-bloggers.com/passing-arguments-to-an-r-script-from-command-lines/ On Mon, Oct 30, 2017 at 2:30 PM, Morkus via R-help <r-help at r-project.org> wrote: > Is it possible to pass parameters to an R Script, say, from Java or other > language? > > I did some searches, but came up blank. > > Thanks very much in

Thanks Duncan. Awesome ideas! I think we're getting closer! I tried what you suggested and got a possibly better error... . . . rConnection.assign("boxMVariable", myDf); String resultBV = "str(boxMVariable)"; // your suggestion. RESULTING ERROR: Error in format.default(nam.ob, width = max(ncn), justify = "left") : invalid 'width' argument (No idea

Trying to get past a frustrating error to do a "simple" Box's M test using Java. The Box's M test says it will work with a data.frame. Here's the setup code: REXP myDf = REXP.createDataFrame(new RList( new REXP[] { new REXPDouble(d1), new REXPDouble(d2), new REXPDouble(d3), new REXPDouble(d4), new REXPInteger(d5) })); Here's the call: REXP boxMResult =

Hello, I'm using Rserve with Java and although it works OK for 50 or 60 requests, eventually Rserve simply stops responding and I have to force-quit and restart Rserve. During this time the JVM is fine and Tomcat (app server) is fine, too. The basic Java code does this: -------------------------------------------- 1. Create an R Connection 2. Execute an R Script via Rserve "eval"

I'm not sure what you mean. Could you please be more specific? If I print the string, I get: boxM(boxMVariable[, -5], boxMVariable[, 5]) From this code: . . . // assign the data to a variable.rConnection.assign("boxMVariable", myDf); // create a string command with that variable name.String boxVariable = "boxM(boxMVariable[, -5], boxMVariable[, 5])";

?maintainer ## i.e. maintainer("rserve") Also, please search. A web search on simply "rserve" brought up what appeared to be many relevant hits. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Nov

Hey Duncan, Since Java is the #1 language and R is extremely popular, I think the most telling thing is that nobody on the "R-devel" forum (where people do "programming with R") is doing R and Java like I'm doing: calling R from Java and passing data structures. So it appears I'm clearly pushing R somewhere it doesn't want to go. And, the boxM issue is more or

Hi All, OK, in the "back to the drawing board" department, I found what looks like a much better solution to using R in Java. Renjin. Looking at the docs and then trying a quick example, didn't quite work. Of course I'm missing something. Although I'm telling the engine to require ("biotools") just like I would in R itself, when I get to the line of code that

Hi all, Using RConsole, it's easy to get data from the database that you can use in an R Command. Like this: (Reference case) irisQuery <- dbGetQuery(conn, "select * from iris") boxM(irisQuery [,-5], irisQuery[,5]) ---- (Actual case this posting is about) Yet, if I'm getting that same (sample IRIS) data, say, in a web service possibly POSTED from a SQL command, that same

It can't be this hard, right? I really need a shove in the right direction here. Been spinning wheels for three days. Cannot get past the errors. I'm doing something wrong, obviously, since I can easily compute the Box's M right there in RStudio But I don't see what is wrong below with the coding equivalent. The entire code snippet is below. The code fails below on the call to

Hello All, Although running Java from R used to work, for some mysterious reason, it's stopped. Today when I tried to load a basic JDBC driver (or the sample .jinit()) code, I got: - JavaVM: requested Java version ((null)) not available. Using Java at "" instead. - JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib - JavaVM FATAL: Failed to load the jvm library. I

Hello, I'm new to R so this is probably a simple question for somebody. I have an RScript that reads a CSV on the disk using read.table(...). It then does a boxM test using that data. However, I'm now trying to load the same data via an SQL command, but I can't seem to get the data structure defined so R will like it -- using the included "iris" dataset. I've tried

On 29/10/2017 7:26 AM, Morkus wrote: > Thanks Duncan. I can't tell you how helpful all your terrific replies > have been. > > I think the biggest surprise is that nobody appears to be using Java and > R together like I"m trying to do. I suppose it should be a surprise > since there are no books on the subject and almost no technical > documentation other than a

On 28/10/2017 8:59 AM, Morkus wrote: > Hey Duncan, > > Hard to debug? That's an understatement. Eyes bleeding.... > > In any case, I tried all your suggestions. To get "integer" for the > final column, I had to change the code to get integers instead of strings. The last column in iris is actually a factor. That's stored as an S3-classed integer vector