Displaying 20 results from an estimated 2000 matches similar to: "R_LIBS_USER on Ubuntu 16.04"
2017 Jul 02
2
/etc/R/Renviron doesn't set R_LIBS_USER anymore
Hi
An upgrade to R 3.4.1 on Ubuntu removed the default setting of
R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks.
Best regards
Kirill
2017 Jul 02
3
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
> On 2 July 2017 at 21:39, Kirill M?ller wrote:
> | Hi
> |
> | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
> | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks.
>
> Pretty much exactly what I told you in person last week :)
>
> - idea is to prefer /usr/local/lib/R/site-library/
2017 Sep 16
1
R_LIBS_USER not in libPaths
I have not intentionally set R_LIBS_USER. I looked for an Renviron.site
file but did not see it in R/etc or my home directory. The strange part is
that if I print Sud.getenv I see a value for R_LIBS_USER. However, this
directory is not showing under libPaths.
I though .libPaths should contain R_LIBS_USER.
I also noticed that R related variables are not in the system or user
variables because I
2020 Mar 19
2
R CMD check --as-cran attempts to hide R_LIBS_USER but fails
AFAIU, 'R CMD check --as-cran' tries to hide any site and user package
libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary
to R_LIBS_SITE, it fails for R_LIBS_USER and the user's personal
library is still available for test scripts. Should I revise my
assumptions, or is that intentional?
The short version. Shouldn't:
$ R_LIBS_USER='' Rscript --vanilla -e
2017 Jul 03
0
R_LIBS_USER on Ubuntu 16.04
On 3 July 2017 at 15:35, Stefan L?dtke wrote:
| the recent update to R-3.4.1 kind of screwed the path to the libraries
| installed on a user basis.
|
| The previous version of the file /etc/R/Renviron had the following line
| activated:
|
| R_LIBS_USER=${R_LIBS_USER-'~/R/x86_64-pc-linux-gnu-library/3.4'}
|
| This one is commented in the current one which means that the path to the
|
2020 Mar 19
1
R CMD check --as-cran attempts to hide R_LIBS_USER but fails
On Wed, Mar 18, 2020 at 8:04 PM Dirk Eddelbuettel <edd at debian.org> wrote:
>
>
> On 18 March 2020 at 19:19, Henrik Bengtsson wrote:
> | AFAIU, 'R CMD check --as-cran' tries to hide any site and user package
> | libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary
>
> What makes you think that? AFAIK --as-cran just sets a bunch of the (nearly
2017 Jul 03
1
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 2017-07-03 09:58, Dirk Eddelbuettel wrote:
> On 2 July 2017 at 23:24, Kirill M?ller wrote:
> | On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
> | > On 2 July 2017 at 21:39, Kirill M?ller wrote:
> | > | Hi
> | > |
> | > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
> | > | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this?
2017 Sep 16
0
R_LIBS_USER not in libPaths
I'm not sure I follow what.the problem is. Are you trying to
set R_LIBS_USER but R does not acknowledge it, or do you observe something
in R that you didn't expect to be there and you are trying to figure out
why that is / where that happens?
Henrik
On Sep 16, 2017 07:10, "Rene J Suarez-Soto" <rene.j.suarez at gmail.com> wrote:
> I have a computer where R_LIBS_USER is
2023 Mar 16
2
Request: better default R_LIBS_USER
On 16 March 2023 at 13:39, Felipe Contreras wrote:
| I see R by default installs packages in ~/R. I know I can change the
| default directory with R_LIBS_USER, but software shouldn't be
| polluting the home directory.
|
| For example both python and node install packages to ~/.local/lib,
| ruby to ~/.local/share. They don't install to for example ~/node.
|
| R should do the same: it
2014 Apr 01
1
Head's up: Renviron change in R_LIBS_USER to 3.1
Hi
Here's a warning for you. If you start R today and it can't find any
packages in your home directory that it did find yesterday, don't
faint. You'll see something like this:
> library(data.table)
Error in library(data.table) : there is no package called 'data.table'
and your user home folder R packages will no longer appear in path:
> .libPaths()
[1]
2017 Sep 16
4
R_LIBS_USER not in libPaths
I have a computer where R_LIBS_USER is not found in libPaths. This is for
Windows (x64). I ran R from the command line, RGui and RStudio and I get
the same results. I also ran R --vanilla and I still get the discrepancy.
The only thing I found interesting was that I also ran SET from the command
line and the "R related variables" (e.g., R_HOME; R_LIBS_USER) are not
there. Therefore
2013 Jun 12
1
Windows R_LIBS_USER confusion under R-3.0.1
I would appreciate ideas about MS Windows install issues. I'm at our stats
summer camp and have been looking at a lot of Windows R installs and there
are some wrinkles about R_LIBS_USER.
On a clean Win7 or Win8 system, with R-3.0.1, we see the user library for
packages defaulting to $HOME/R/win-library.
I think that's awesome, the way it should be. Yea! But it does not appear
that way
2017 Jul 03
2
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On Mon, 03-07-2017, at 07:58:41, Dirk Eddelbuettel <edd at debian.org> wrote:
> On 2 July 2017 at 23:24, Kirill M?ller wrote:
> | On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
> | > On 2 July 2017 at 21:39, Kirill M?ller wrote:
> | > | Hi
> | > |
> | > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
> | > | R_LIBS_USER in /etc/R/Renviron.
2017 Feb 09
2
R CMD check error
Martin,
I am aware of --vanilla; I use it myself for some testing. In this case R_LIBS_USER was
set externally (part of my login) and does not involve any of the R scripts. That means
it is inherited by any subprocess. For example:
tmt1495% R --vanilla --no-environ
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
2017 Jul 07
1
Regarding R_LIBS_USER
On 7 July 2017 at 05:06, Dirk Eddelbuettel <edd at debian.org> wrote:
> On Thu, Jul 06, 2017 at 02:02:52PM +0200, Sergio Oller wrote:
> > Hi,
> >
> > As comments are welcome I will give my two cents and a patch suggestion
> :-)
> >
> > 2017-07-06 10:42 GMT+02:00 Dirk Eddelbuettel <edd at debian.org>:
> > >
> > >
> > > I
2023 Mar 16
1
Request: better default R_LIBS_USER
Hi,
I see R by default installs packages in ~/R. I know I can change the
default directory with R_LIBS_USER, but software shouldn't be
polluting the home directory.
For example both python and node install packages to ~/.local/lib,
ruby to ~/.local/share. They don't install to for example ~/node.
R should do the same: it should install packages to somewhere inside
~/.local by default.
2019 Jan 06
2
change default path for installing r-cran packages by sudo apt r-cran...?
dear dirk,
i am following up on our thread on r-help-mailinglist. you advised me to
bring it over here.
when installing packages from within R, they usually go to a directory
defined in R_LIBS_USER, which i have it set in .Renviron.
when installing packages via sudo apt install r-cran-.., they go to
/usr/lib/R/site-library.
is there a possibility to have packages installed to the R_LIBS-USER
2023 Mar 17
1
Request: better default R_LIBS_USER
> Your best bet really to govern your .libPaths from your Rprofile.site and
Renviron.site ...
To do this for any version of R, one can add:
R_LIBS_USER=~/.local/share/R/%p-library/%v
to ~/.Renviron or the Renviron.site file. This automatically expands
to the platform and R x.y version early on when R starts up, e.g.
~/.local/share/R/x86_64-pc-linux-gnu-library/4.2.
> rather than asking a
2015 Mar 30
2
Debian Testing: ~/.Renviron seems to not being read (R_LIBS not set)
Hi,
I have Debian Testing running on a Lenovo Thinkpad X1
Carbon (2015, 3rd gen.). I would like to have a package library
independent of the installed R version. Under Ubuntu, I used to
have the following line in ~/.Renviron:
R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked
fine and /usr/local/R/library showed up in .libPaths().
However, under Debian (with the same ~/.Renviron),
2010 Jul 01
1
How best to set library search path so user libraries come first
I want my local libraries to have priority over the system installed
ones, which, as far as I can make out from help(".libPaths"), means they
have to come first in that list (it doesn't actually_say_ so, but that
seems to be the idea).
We have R_LIBS_USER which looks made for specifying where I keep my own
libraries. Unfortunately it comes last in .libPaths() [which appears to