similar to: Default R-3.4.0 RC CXXFLAGS without -O2 on x86_64-linux-gnu with g++-5.4.0 causes WARNING from stl_list.h

This is fixed in R-rc_2017-04-19_r72555.tar.gz If you are affected by this issue then please test the RC tarball. This is the last chance to detect problems (including those created by the last-minute patch) before the release of R 3.4.0. Martyn On Wed, 2017-04-19 at 12:19 +0000, Neumann, Steffen wrote: > Hi r-devel, > > a recent install of R-3.4.0 RC (2017-04-13 r72510)? > on

Hi, I am trying to create a BioMoby client in R using SSOAP. BioMoby is a normal SOAP web service, with request and response messages wrapped in BioMoby XML dialect. Since the particular WSDL I am having problems with is autogenerated and used similarly by *many* services, it would be quite important to a) fix SSOAP or b) fix the WSDL generator. I am a bit lost how to continue debugging

Hi, I have a SOAP service, provided by BioMoby which I'd like to call via SSOAP. My service breaks during genSOAPClientInterface() genSOAPClientInterface(def=service, verbose = TRUE) Operation MassBank_Simple_2 Error: Cannot resolve SOAP type in empty context Problem seems to be that there are no <types> defined in the WSDL, and that the service passes input/output as a single

Hi, I am trying to create a plot with pairs() using a gplot.hexbin() for each pair. For pairs I can provide a custom upperPanel function: pairs(iris[1:4], panel=mypanel) and mypanel() calls plot.hexbin(): library(hexbin) # Bioconductor mypanel <- function(x, ...){ hb <- hexbin(x) plot(hb) } The problem is that gplot.hexbin() is based on the

Dear R-developers, I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have been successful until R 3.3.3 but now it stops complaining about pcre though it worked without Intel MKL as follows, ./configure LDFLAGS=-L/genetics/data/software/lib CFLAGS=-fPIC -I/genetics/data/software/include --enable-R-shlib I have used, export MKL_NUM_THREADS=15 export

First of all, let me confess that I am a newbie to R and don't know much about the language or the environment. We have a need for plugging in R in our production runtime and need the ability to pull data out of our existing services. I am trying to see if I can take advantage of SSOAP such that we can expose the data via webservices and use SSOAP to call into them. Our runtime is mostly

On our Scientific Linux 6, there is gcc --version gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-17) and later version (a symbolic at HOME to the system directory), export MKL=/home/jhz22/11.3.3.210/mkl export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64 ./configure --prefix=/home/jhz22 LDFLAGS=-L/home/jhz22/lib CPPFLAGS=-I/home/jhz22/include \ --enable-R-shlib --with-lapack \

Hi, so, last post from here unless I can provide any more input to fix the upstream package. On Tue, 2010-06-22 at 10:02 +0200, Steffen Neumann wrote: > So I got a bit further, the reason for the error is > that the WSDL *does not have* any <wsdl:types>...</wsdl:types>, I created a local copy and inserted a dummy <wsdl:types>...</wsdl:types> element. Then, my

Hi, we're running wine on a number of Linux machines which get their $HOME via a NFS server. In particular, we have a windows commandline program (a data format converter for mass spectrometers, not that it matters) things work fine as long as I am running only one instance of wine. If I have several wine instances on different boxes running in parallel, they seem to corrupt the

Hi again, On Tue, 2010-06-22 at 10:02 +0200, Steffen Neumann wrote: > So, if XMLSchema:::processSchemaTypes() does not find > any custom/embedded type definitions, is it possibe to "inject" those > from the http://www.w3.org/2001/XMLSchema.xsd > into genSOAPClientInterface() instead ? Well, it's not possible, at least for me. This is as far as I got, any help

Hi everybody, I am a beginner in the steps of pre-processing and data analysis of non-targeted metabolomic profiling experiments. Anyone knows if there exists some tool for normalizing this type of data (raw data or XCMS matrix data) in R repositories? Many thanks in advance. Best regards, Núria ------------------------------------------------------- Núria Queralt

Hi, I am using xcms library to read mass spectrum data. I generate objects from CDF files using the command line > SME10 <- xcmsRaw("SME_10.CDF") I have 50 CDF files with different name and I don't want to repeat the command for each one. Is there any option to read all the files and generate a corresponding object name? In advance thank you Roberto [[alternative HTML

I use R (2.15.2) on a windows 7 (64) for data mining with xcms package. This is a routine process for me and didn't encount any problems until few weeks ago when I got an error message for "R GUI frond end has stopped working". The following information was given by windows to describe the error. > \AppData\Local\Temp\WER5936.tmp.WERInternalMetadata.xml >

Hello, I experienced a compiler error when I tried to compile the latest version of R i.e. R4.0.2 making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c grep.c(74): catastrophic error: cannot open source file "pcre2.h" # include<pcre2.h> (The pcre2.h header file is actually present!) I used the

On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomplete, sometime fantasist et do not give > >

A package that I develop (xcms) sometimes needs to read and process vectors several hundreds of megabytes in size. (They only represent parts of a large data sets which can approach nearly 100GB.) Unfortunately, R sometimes hits the 2GB memory limit of Win32. To help cut the memory footprint in half, I'm implementing a "float" class as a subclass of "raw". Because

After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per

On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote: > Hi Arnaud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly when using the single dynamic library (lmkl_rt):

On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure

Alan Coopersmith (20): Move Compose \ o / to be with other emoji compose sequences Replace Xmalloc+memset pairs with Xcalloc calls Get rid of some extraneous ; at the end of C source lines Remove unused definition of XCONN_CHECK_FREQ Bug 93184: read_EncodingInfo invalid free Bug 93183: _XDefaultOpenIM memory leaks in out-of-memory error paths Delete #if 0