similar to: failure of make check-all

You may want to retry that after a make distclean, in case anything changed in the toolchain. -pd > On 6 Apr 2017, at 14:43 , Therneau, Terry M., Ph.D. <therneau at mayo.edu> wrote: > > This run was done this AM on my linux box, and older 32 bit Dell optiplex (core 2 duo). The failure message is at the very end. (It's due to be replaced in a couple of weeks.) The sequence

Peter, Retry how much of it? That is, where does it go in the sequence from svn up to make check? I'll update my notes so as to do it correctly. In any case, I put it first and reran the whole command chain. I had recently upgraded linux from 14.xx LTS to 16.04 LTS so it makes sense to start over. This removed the large diff in base-Ex.Rout from the first part of the log, but the

> On 6 Apr 2017, at 15:51 , Therneau, Terry M., Ph.D. <therneau at mayo.edu> wrote: > > Peter, > Retry how much of it? That is, where does it go in the sequence from svn up to make check? I'll update my notes so as to do it correctly. From the configure step, I'd expect. Actually, now that I look at your output again, you seem to be compiling in the source

Hello, I installed R 2.13.0 on a Windows 2003 server.? I downloaded the Rtools213.exe from http://www.murdoch-sutherland.com/Rtools/ and placed it in the path (C:\Program Files\R\R-2.13.0\bin). I submitted the following code: library(tools) Sys.setenv(LC_COLLATE=C) testInstalledBasic('basic') I get the following message in the R Console, which I believe corresponds to a failure of the

Hi, R-2.1.1, R-patched, and the latest R-beta--all fail with same error OS: OpenBSD-current (3.8) on i386 Compiler:gcc version 3.3.5 (propolice) Thread model: single configure \ --with-readline \ --with-tcltk \ --with-tcl-config=/usr/local/lib/tcl8.4/tclConfig.sh \ --with-tk-config=/usr/local/lib/tk8.4/tkConfig.sh \ --with-libpng \ --with-jpeglib \ --with-zlib \

Full_Name: Jim Brown Version: 2.6.0 / 2.6.1 OS: Solaris 10 (SPARC) Submission from: (NULL) (35.8.15.102) I have been able to successfully compile version 2.5.1 using the Sun Studio 12 compilers on Sun Solaris 10 (SPARC). All tests using "make check" pass with a status of OK. However, the following section of "reg-tests-1.R" fails when I attempt to test after a build of

Hi, R-2.1.1 OS: OpenBSD-current (3.8) on i386 Compiler:gcc version 3.3.5 (propolice) Thread model: single configure \ --with-readline \ --with-tcltk \ --with-tcl-config=/usr/local/lib/tcl8.4/tclConfig.sh \ --with-tk-config=/usr/local/lib/tk8.4/tkConfig.sh \ --with-libpng \ --with-jpeglib \ --with-zlib \ --with-bzlib \ --with-pcre \ --with-libiconv-prefix=/usr/local/

Hello, I am trying to install R0.99 on my PC running Solairis 7. Here is some text from my shell when I ran 'make check': running `primitive-funs.R' comparing `primitive-funs.Rout' to `./primitive-funs.Rout.save' ... OK running `mode-methods.R' comparing `mode-methods.Rout' to `./mode-methods.Rout.save' ... OK running `simple-true.R' comparing

Hola! I had my hard disk and cpu fried, so had to reinstall debian from scratch, and now I have problems compiling R R-2.14.0. My system is wheezy with Xfce4 desktop. (-amd-64) ./configure make runs without problems, but make test dose not! Here is some of the output from make test: kjetil at kjetil:~/R/R-2.14.0$ make check make[1]: Entering directory `/home/kjetil/R/R-2.14.0/tests'

A strange thing happened. After installing the most recent RC version of 2.7 (2008-04-20 r45403) I compiled it as usual with no errors. After installing it I ran "make fullcheck". I got as far as testing recommended packages and I got the following: ... -------- Testing package foreign -------- Running examples in 'foreign-Ex.R' ... Comparing `foreign-Ex.Rout' to

I also vote for the 'helpful' addition on row numbers based on the original matrix when no row names are present, with an optional argument to prevent this behaviour. -G > -----Original Message----- > From: Duncan Murdoch [mailto:dmurdoch@pair.com] > Sent: Monday, July 12, 2004 8:06 AM > To: Patrick Burns > Cc: Martin Maechler; Warnes, Gregory R; Prof Brian Ripley; >

uname -a => SunOS frege 5.9 Generic_112233-04 sun4u sparc SUNW,Sun-Blade-100 Today I downloaded R-1.7.1.tgz, unpacked it, did ./configure and ran make. All apparently went well. Then I did make check. On rerunning make check (because I forgot to save the output the first time), I get f% make check `Makedeps' is up to date. `base-Ex.Rout' is up to date. `ctest-Ex.Rout' is up to

Dear R People: I thought all was well with my source compilation on Windows until I tried "make check" Here is an abbreviated version of my results: C:\esr\R-2.5.0\src\gnuwin32>make check make check -------- Testing package base -------- Running examples in 'base-Ex.R' ... Comparing `base-Ex.Rout' to `base-Ex.Rout.prev' ...diff: extra operand

Greetings... ** Short Description / Abstract ** Using my _internal_ WiFi card, OpenSSH succeeds to local (internal) LAN hosts, but hangs after authentication to external LAN hosts; however PuTTY works for all hosts. Using an _external_ WiFi card, OpenSSH does succeed to all LAN hosts (as did PuTTY, still, as well). ** Longer Description and Details ** *** HW Description *** I have a laptop

Hi, I added the "tests" subdirectory and a test file (say "myTest.R") to our "systemfit" package. Up to now I create the "myTest.Rout.save" file with > R CMD BATCH --vanilla myTest.R myTest.Rout.save However, "R CMD check" reports two differences between myTest.Rout.save and the output of myTest.R: a) myTest.Rout.save contains following

Below is the output. Thanks for the help. > Sys.getenv() BASH_FUNC_module() () { eval `/cm/local/apps/environment-modules/3.2.10/Modules/$MODULE_VERSION/bin/modulecmd bash $*` } COLUMNS 152 CPATH /cm/shared/apps/uge/8.2.1/include CVS_RSH ssh DISPLAY localhost:10.0 EDITOR

I am installing R 2.15.1 onto RHEL 6, using gcc 4.7.0 with Intel MKL 10.3.7 and the following environment: export BLAS_LIBS="-Wl,--start-group /usr/caen/intel-12.1/mkl/lib/intel64/libmkl_gf_lp64.a /usr/caen/intel-12.1/mkl/lib/intel64/libmkl_sequential.a /usr/caen/intel-12.1/mkl/lib/intel64/libmkl_core.a -Wl,--end-group -lpthread" export LAPACK_LIBS="-Wl,--start-group

I compiled R 2.1.0 under Windows XP SP2 as a preliminary to rebuilding a custom package for use with R 2.1.0. The compile completed successfully, and I was able to run demo(graphics) successfully. But make check and make check-recommended fail. > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 1.0 year 2005

It would be nice if the 00check.log file also included this part of the output: Running ?bladder.R? Comparing ?bladder.Rout? to ?bladder.Rout.save? ... OK Running ?book1.R? Comparing ?book1.Rout? to ?book1.Rout.save? ... OK Running ?book2.R? Comparing ?book2.Rout? to ?book2.Rout.save? ... OK etc. The survival package has enough test scripts that it exceeds my terminal's scroll

I'm having a very hard time making R CMD check produce a clean check on examples because of the timings inserted into examples by R CMD check. I am getting a difference on every example output caused by timing information being inserted by 'R CMD check'. The current 'Writing R Extensions' manual[1] states on p. 14: If directory tests has a subdirectory Examples