similar to: weird dir() behavior with broken symlinks

CRAN has a package of mine in upload limbo because it failed UBSAN. I am not entirely ignorant on the topic of sanitizers and SAN / ASAN / UBSAN; we created not one but two Docker containers with ASAN and USBAN: https://registry.hub.docker.com/u/rocker/r-devel-san/ https://registry.hub.docker.com/u/rocker/r-devel-ubsan-clang/ as well as predecessors to them in earlier Docker repos. Yet I

On Wed, Apr 5, 2017 at 2:24 PM, Robert McGehee <rmcgehee at walleyetrading.net> wrote: > Winston, > I had a similar experience to you tracking down an insanely difficult bug > in my R code that "disappeared" whenever slight changes were made to the > script (e.g. like adding cat() statements). In my case, it coincided with > my over-eager compilation of R and its

Hi Dave and Dirk, sorry, I do not understand half of this, as I do not use docker myself. Buf if Dirk does not use Debian buster as the basis for his Rocker container, then you should probably not try to install the backport to buster. Shouldn't these docker containers be there to avoid the need to install R? Johannes Am Montag, 22. Juni 2020, 19:15:56 CEST schrieb Dirk Eddelbuettel:

On 21 November 2019 at 17:57, Martin Maechler wrote: | (if you use a version of R-devel, with svn rev >= 77446; which | you may get as a binary for Windows in about one day; everyone | else needs to compile for the sources .. or wait a bit, maybe | also not much longer than one day, for a docker image) : FYI: rocker/drd [1] and rocker/r-devel both have rev 77455 now (as they are both on

On 12 February 2017 at 12:28, Jeroen Ooms wrote: | On Mon, Dec 19, 2016 at 2:27 PM, Terje J?rgensen <terjej at imr.no> wrote: | > Hi, | > | > I am unable to install tibble, a required package for ggplot2 in R. I am | > running R (version 3.3.2 ) in RStudio (version 1.0.44). My OS is ubuntu | > 14.04 (64 bits). | | I was able to reproduce this problem. What happened is that

My dockerfile: FROM python:3 WORKDIR /usr/src/app COPY requirements.txt ./ COPY languageserver-master ./ COPY radian-master ./ RUN pip3 install --no-cache-dir -r requirements.txt EXPOSE 8080 RUN apt-key adv --keyserver keys.gnupg.net --recv-key 'E19F5F87128899B192B1A2C2AD5F960A256A04AF' RUN echo "deb http://cloud.r-project.org/bin/linux/debian buster-cran40/" >>

On 8 July 2024 at 19:32, marcoblanchette at icloud.com wrote: | Oh, again, sorry for the spam but the problem Lauren is seeing is when she is | trying to sign the key. Installing gnugpg usually takes care of that problem. I am not sure about that. For jammy, my current (and used) rocker/r2u:jammy Dockerfile is https://github.com/rocker-org/r2u/blob/master/jammy/Dockerfile and it does what

One of my packages is slated to be archived from CRAN due to failures when the ATLAS BLAS is used. I am unable to replicate the error on my machine under R 3.6.1 using the atlas library from ubuntu (seems to be 3.10.2-9, while the good professor is using 3.10.3 per https://www.stats.ox.ac.uk/pub/bdr/Rblas/README.txt ). I also tried the rocker/r-base with R 3.6.2 and

Dear Johannes, R-sig-debian list, Along with Dirk Eddelbuettel I've been maintaining Debian-based Docker containers for R. Recently our container installing r-base has started to fail. This seems to be due to a problem with the libjpeg dependencies. The example I show below was working with debian:jessie on Jan 5th, but has been failing since then.

No. I didn't do any of that and am now at a hockey game. But since I can't reproduce the problem after an Ubuntu online update and reboot, I assume the issue is moot. But I will check these things in an hour or so. On Sat, Feb 29, 2020, 3:24 PM Dirk Eddelbuettel <edd at debian.org> wrote: > > Charles, > > Did you try a build of the provided alpha, beta and rc releases

Hello, I spent a lot of a time on a weird bug, and I just managed to narrow it down. In parallel code (here with parallel::mclappy, but I got it doMC/multicore too), if the library(tcltk) is loaded, R hangs when trying to open a DB connection. I got the same behaviour on two different computers, one dual-core, and one 2 xeon quad-core. Here's the code: library(parallel) library(RSQLite)

Hi: I have a Dockerfile, which builds an image which installed R 3.3.2 in Ubuntu 14.04, but building using that Dockerfile seems to have stopped working and I am unclear why. I believe the relevant error is: Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet

Hi Thanks for that, but I still cannot confirm on ... sudo docker run -v $(pwd):/home/work/ -w /home/work --rm -ti rocker/r-ver:3.5.1 Could you please read the comments within the "Cairo Fonts" section of the ?X11 help page, in case that offers some explanation. Paul On 29/08/18 02:15, Martin M?ller Skarbiniks Pedersen wrote: > On Fri, 24 Aug 2018 at 19:53, Edzer Pebesma >

Hi, thanks for the fast reply! On Fri, Nov 22, 2019 at 2:15 PM Dirk Eddelbuettel <edd at debian.org> wrote: > > Tim, > > On 22 November 2019 at 12:03, Tim Head wrote: > | One language we support is R. We let people choose which version they > need > | and because we are based on Ubuntu we use the packages provided on > |

I did some googling and then ran: > bspm::shadowed_packages() ???? Package???????????????? LibPath Version?????? Shadow.LibPath Shadow.Version Shadow.Newer bspm????bspm /usr/lib/R/site-library?? 0.5.7 /home/ravi/rvi/Rlib??????????0.5.7????????FALSE I have a copy of bspm in the /usr/lib/R/site-library location as well, although that is not the 1st in my list of libPaths. This got included

Hi Johannes, On 18 January 2015 at 20:47, Johannes Ranke wrote: | At the moment you are on your own with R 3.1.2 on jessie. The easiest safe bet in my opinion | would be to install from the Debian sources in unstable, i.e. add a deb-src entry for unstable | to your sources.list, do an apt-get build-dep r-base and then apt-get source --build r-base | and install the packages with dpkg. Ok. I

On 04/29/2017 04:38 AM, Stefano Ricci wrote: > 2017-04-28 14:33 GMT+02:00 Michal Privoznik <mprivozn@redhat.com>: >> On 04/27/2017 04:31 PM, Stefano Ricci wrote: >>> Here is the backtrace of the libvirt process just started >> >> [Just a side note, you shouldn't top post on technical lists. Gmail >> sucks at this.] >> >>> >>>

When I read a .gz file with readLines() in 3.4.3, it returns text (and a warning). In 3.5.0, it gives a warning, but no text. Is this expected behavior or a bug? 3.4.3: > source_file = "1k_annotation.gz" > readfile_con <- gzfile(source_file, "r") > readLines(readfile_con, n = 5) [1] "#chr\tpos\tref\talt\t <truncated output here> Warning message: In

CRAN, by relying on the powerful package management system that is part of R, provides an unparalleled framework for extending R with nearly 20k packages. We recently encountered an issue that highlights a missing element in the otherwise outstanding package management system. So we would like to start a discussion about enhancing its feature set. As shown below, a mechanism to force

Dear List: I'm posting this to provide a possible solution and to document to what appears to be an R limitation. The solution is more of a cheap hack that works for now. To provide a little background, I am looping through a dataframe and creating Sweave documents using data from each row in the dataframe. It appears that this technique is not scalable to large dataframes without making some