similar to: new function to tools/utils package: dependencies based on DESCRIPTION file

Dear Joris, So it does looks like the proposed function makes a lot sense then, isn't it? Cheers, Jan On 16 June 2016 at 08:37, Joris Meys <jorismeys at gmail.com> wrote: > Dear Jan, > > It is unavoidable to have OS and R dependencies for devtools. The building > process for packages is both OS and R dependent, so devtools has to be too > according to my understanding.

Hi Michael, Are you willing to accept patch for this? I'm already using this and few related functions for a while, it plays well. I could wrap it as patch to utils, or tools? Best, Jan On 16 June 2016 at 14:00, Michael Lawrence <lawrence.michael at gene.com> wrote: > I agree that the utils package needs some improvements related to > this, and hope to make them eventually. This

I agree that the utils package needs some improvements related to this, and hope to make them eventually. This type of feedback is very helpful. Thanks, Michael On Thu, Jun 16, 2016 at 1:42 AM, Jan G?recki <J.Gorecki at wit.edu.pl> wrote: > Dear Joris, > > So it does looks like the proposed function makes a lot sense then, isn't it? > > Cheers, > Jan > > On 16

Dear Jan, It is unavoidable to have OS and R dependencies for devtools. The building process for packages is both OS and R dependent, so devtools has to be too according to my understanding. Cheers Joris On 14 Jun 2016 18:56, "Jan G?recki" <J.Gorecki at wit.edu.pl> wrote: Hi Thierry, I'm perfectly aware of it. Any idea when devtools would be shipped as a base R package, or

Dear Jan, Similar functionality is available in devtools::dev_package_deps() Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium To call in the statistician after the experiment is done may be no more than asking

Thank you Gabriel, Just for future readers. Below is a base R way to address this common problem, as instructed by you (+stopifnot to suppress print). Rscript -e 'stopifnot(file.copy("DESCRIPTION", file.path(tdir<-tempdir(), "PACKAGES"))); db<-available.packages(paste0("file://", tdir));

Dear R team, Are suggested dependencies mandatory in context of `R CMD check` when using env var `_R_CHECK_FORCE_SUGGESTS_=FALSE`? Suggested dependencies are nice because are optional. But that feature often isn't valid when trying to run `R CMD check` on them. I would like to use `export _R_CHECK_FORCE_SUGGESTS_=FALSE`, which according to the comment in `tools/R/check.R`: > The

Jan and Hadley, There's also the issue of tests, vignettes, or examples requiring Suggested packages (one of the core applications of Suggests, in fact). These are all checked by R CMD check, so to ensure any package which should pass check would do so without suggested packages installed would require turning all of those checks off, which takes quite a few of the teeth out of R CMD check

On 4 April 2016 at 07:25, Hadley Wickham wrote: | On Sat, Apr 2, 2016 at 5:33 AM, Jan G?recki <J.Gorecki at wit.edu.pl> wrote: | | In principle, I believe a package should pass R CMD check if no | suggested packages are installed. However, since this is not currently The relevant manual says The 'Suggests' field uses the same syntax as 'Depends' and lists packages

Hi Martin, Indeed it does (and I should have confirmed myself with R-patched and R-devel before posting...) Thanks, and sorry for the noise. Kevin On Tue, Aug 25, 2015, 13:11 Martin Morgan <mtmorgan at fredhutch.org> wrote: > On 08/25/2015 12:54 PM, Kevin Ushey wrote: > > Hi all, > > > > The following fails for me (on OS X, although I imagine it's the same >

Dear R devs, I would like to raise a request for a simple helper function. Utility function to extract package dependencies from DESCRIPTION file. I do think that tools package is better place, for such a fundamental functionality, than community packages. tools pkg seems perfect fit (having already great function write_PACKAGES). Functionality I am asking for is already in R svn repository

In fact, this does reproduce on R-devel: > options(download.file.method = "libcurl") > options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = + "http://www.stats.ox.ac.uk/pub/RWin")) > install.packages("lattice") ## could be any package Installing package into ?/Users/kevinushey/Library/R/3.3/library? (as ?lib? is

This question was posed on SO : https://stackoverflow.com/questions/58118495/passing-extra-argumenets-to-devtoolsbuild but there has been no useful reply. Something seems to have changed in the |devtools|package, so that the following commands, that used to run now give an error I can't decipher: |>Sys.setenv(R_GSCMD="C:/Program

On 04/04/2016 01:56 PM, Duncan Murdoch wrote: > On 04/04/2016 1:35 PM, Dirk Eddelbuettel wrote: >> On 4 April 2016 at 07:25, Hadley Wickham wrote: >> | On Sat, Apr 2, 2016 at 5:33 AM, Jan G?recki <J.Gorecki at wit.edu.pl> >> wrote: >> | >> | In principle, I believe a package should pass R CMD check if no >> | suggested packages are installed. However,

Dear R-devel list, I would like to enquire about the existence of blank lines in the DESCRIPTION file. Testing different possibilities with tools:::.read_description suggests that starting or ending with blank lines is acceptable while blank lines in the middle of the file get caught by out <- tryCatch(read.dcf(dfile, keep.white = .keep_white_description_fields), error = function(e)

I realize that others have struggled with this issue...i.e. http://tolstoy.newcastle.edu.au/~rking/R/help/05/01/9826.html i am on os.x 10.4 w/ R2.2, and am (perhaps foolishly) also on this quest... i would like to be able to install downloaded source (tar.gz'd) files from within an R session, and have it work in a X-platform way..i am often not connected to the internet and have libraries

Dear R-experts, Here below the reproducible example. I am trying to get the average of the 100 results coming from the "lst" function. I have tried lst$mean and mean(lst). It does not work. Any help would be highly appreciated. #################### ?## R script for getting MedAe and MedAeSQ from HBR model on Testing data install.packages("robustbase") install.packages(

On Tue, Aug 25, 2015 at 10:33 PM, Martin Morgan <mtmorgan at fredhutch.org> wrote: > > actually I don't know that it does -- it addresses the symptom but I think there should be an error from libcurl on the 403 / 404 rather than from read.dcf on error page... Indeed, the only correct behavior is to turn the protocol error code into an R exception. When the server returns a status

Hi folks, Debian 504 64-bit What is the correct syntax to check the available of a package on R repo? > available.packages("emacs", "OS_type=linux") Warning: unable to access index for repository emacs Package Version Priority Depends Imports LinkingTo Suggests Enhances OS_type License File Repository > available.packages("emacs") Warning: unable

Thank you Dan but it isn't my tests that are failing (all of them pass without problem) but one of the examples from the inst/examples directory. I did try, however, to start R with the environmental variables as you suggest but it had no effect on my tests. Charles On Wed, May 13, 2015 at 1:51 PM, Dan Tenenbaum <dtenenba at fredhutch.org> wrote: > > > ----- Original Message