similar to: boxplot with formula involving two-factor levels

Thanks to David and Jorge - both of your helpful suggestions got me to the desired endpoint. In case anyone else has this question: I boxplotted my y variable data, but did the "cut" operation on the x variable in order to conserve the order of the y data. I see another suggestion coming in from another user that basically says this. So, my working line of code was: boxplot(count$RPKM

mybp <- boxplot(count ~ geno * tissue, data = mydata, plot = FALSE) mybp$names <- gsub("\\.", "\n", mybp$names) bxp(mybp) See ?boxplot for details. Best, Ista On Thu, Sep 28, 2017 at 12:40 PM, Ed Siefker <ebs15242 at gmail.com> wrote: > I have data I'd like to plot using the formula interface to boxplot. > I call boxplot like so: > > with(mydata,

I am trying to use the formula interface for the boxplot. Currently running R 2.2.1 on Windows XP. The problem is that boxplot is displaying groups that are empty in the plot. The following example demonstrates what it is happening (though my actual situation is a little more complicated): > data<-data.frame(values=c(1:25),

Just change the separator: data(Titanic) Titanic.df <- as.data.frame(Titanic) boxplot(Freq~Class*Sex, Titanic.df, cex.axis=.6, sep="\n") See attached .png. ---------------------------------------- David L Carlson Department of Anthropology Texas A&M University College Station, TX 77843-4352 -----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On

I have data I'd like to plot using the formula interface to boxplot. I call boxplot like so: with(mydata, boxplot(count ~ geno * tissue)) I get a boxplot with x axis labels like "wt.kidney". I would like to change the '.' to a newline. Where is this separator configured? Thanks, -Ed

If an array has missing values in different rows, plotting using the formul= a=20 interface can produce errors. Example: fake.data <- matrix(rep(-100:100, 4), ncol =3D 4) par(mfrow =3D c(1,2)) boxplot(fake.data ~ col(fake.data)) abline(h =3D 0, lty =3D 2) boxplot(as.data.frame(fake.data)) abline(h =3D 0, lty =3D 2) ##### Add the missing data fake.data[190:200, 1] <-

R-help, I'm trying to do a simple box-and-whisker plot to some data. The data are a subset of a large data frame but when running the "boxplot" function on the subset data all the factors are still present in the graph leaving a huge empty space until the actuals factors are shown. This produces a spurious box-and-whisker plot. If the subset data are exported to another R session

Hello, I have a data-frame in which one-column is a factor: > str(data); `data.frame': 194 obs. of 8 variables: $ Type : Factor w/ 3 levels "Nuclear-Rec..",..: 1 2 2 2 2 2 2 2 2 2 ... $ Locus : num 0.000571 0.004000 0.001429 0.004857 0.007429 ... And I'd like to make a boxplot of the data$Locus values, where each level of the factor gets its own

Hi: I have a question making side by side boxplot. My response is numeric and I want to make a side by side boxplot of it accroding to a factor vector. So, there are several boxplots on the same plot. Each boxplot is with respect to one level for a factor. The levels of the factor are some characters. When I make the plot, the boxplots are arranged according to the alphabetic order of the

I'm sure I'm missing something obvious in the documentation... I'm generating a boxplot boxplot(CleanValue~ApptCategory*ReportingCode,data=newfile) where ApptCategory is a factor with possible values ("New","Established") Problem is, the output orders those factors alphabetically, and I'd really rather see New come first. I'm apparently confused by the

I want the levels to appear in the boxplot instead of 1 and 2. What do I need to do for that? Here is the dummy code. x<-runif(100,50,80) x1<-runif(100,70,80) True.positives<-c(x,x1) splice<-factor(c(rep("Human.AA.200",100),rep("Human.AA.100",100))) splice<-factor(splice,levels=c("Human.AA.200","Human.AA.100"))

The issue is not with boxplot, but with split. boxplot.formula() calls boxplot(split(split(mf[[response]], mf[-response]), ...), but look at what split() returns when there are empty levels in the factor: > f <- factor(gl(3, 6), levels=1:5) > y <- rnorm(f) > split(y, f) $"1" [1] 0.4832124 1.1924811 0.3657797 1.7400198 0.5577356 0.9889520 $"2" [1] -1.1296642

I want to produce some boxplots and plot the logged values but have the axis scale in the original, not-logged scale. It seeming like I have the first few steps but I'm having trouble with the last. Here's what I'm doing (which I got for the documentation for boxplot and axis). How do I get the ticks to be labeled 2,5, and 9 of the original scale? a<-c(1,2,3,4,5,6,7,8,9,10)

Hello, I have been having difficulty getting boxplot to give the output I want - probably a result of the way I have been handling the data. The data is arranged in columns: each date has two sets of data. The number of data points varies with the date, so each column is of different length. I want to get a series of boxplots with the date along the x-axis, with alternating colors, so that it

Hi The answer to this may be obvious, but it's got me floored. I'm unable to get boxplot.stats to work for me! My session looks something like this: > ia=read.table('/tmp/prueba.csv', header=TRUE, sep=",") > attach(ia) > boxplot.stats(X8weeks~Orden) Error in sort (na.last, decreasing, ...) : argument 1 is not a vector In addition: Warning

Hello all, I wrote a small function to add labels for outliers in a boxplot. This function will only work on a simple boxplot/formula command (e.g: something like boxplot(y~x)). Code + example follows in this e-mail. I'd be happy for any suggestions on how to improve this code, for example: - Handle boxplot.matrix (which shouldn't be too hard to do) - Handle cases of complex

I am using R 2.2.1 on a Windows 2000 PC. When I do a grid() after the boxplot it overprints the boxplot: > boxplot(count ~ spray, data = InsectSprays, col = "lightgray") > grid(nx=NA, ny=NULL) > if I try the panel.first > boxplot(count ~ spray, data = InsectSprays, col = "lightgray", + panel.first=grid(nx=NA, ny=NULL)) > I can see the grid flash

Hello, I have created two boxplots with following R code. There is one outlier in B group. The outlier is 33. But the all other data are between 0 to 4. How can I skip y-axis around 5 to 25, and expand 0-4 for this case. Also I want keep the outlier in my boxplot. I want my boxplot look like the second one, keep the outlier, and make an interrupt of y-axis from 5 to 25. Thanks, Jianghong

R list- Under Windows 2000 and r 99: I wanted a subtitle in boxplot and tried: > boxplot((AU[ROCK==2 & AU>-1]+0.1~iz),log="y",main="Boxplot of AU by 25 M elevations",sub="aa") And I got: Error in sort(x) : only vectors can be sorted In addition: Warning messages: 1: is.na() applied to non-(list or vector) in: is.na(x) 2: is.na() applied to non-(list

Dear R-core team, I think I found a small inconsistency in the boxplot function. I don't want to post it as a bug since I'm not sure this might be considered as one according to the FAQ --- and this is not a major problem. Don't hesitate to tell me if I'm wrong. If you try to do a boxplot on a matrix and set the "at" argument to some vector different from 1:n, n is the